Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 4.2e-54 214.5 115 100.0
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 9.9e-48 193.4 115 90.4
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 2.4e-33 145.6 119 75.6
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 2.7e-29 132.1 121 70.2
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 1.1e-25 120.2 127 65.4
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 3.1e-25 118.6 124 65.3
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 1.5e-24 116.3 130 62.3
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 3.8e-23 111.7 116 60.3
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 3.8e-23 111.7 116 60.3
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 3.8e-23 111.7 135 59.3
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.6e-21 106.3 130 57.7
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 2.3e-20 102.4 126 53.2
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 8.7e-20 100.5 127 53.5
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 2.5e-19 99.0 127 51.2
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.3e-17 91.3 121 52.1
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 9.0e-17 90.5 134 47.0
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.6e-16 89.0 120 49.2
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.6e-16 89.0 120 49.2
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 5.9e-16 87.8 128 47.7
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 7.7e-16 87.4 134 48.5
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 1.3e-15 86.7 128 50.8
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 1.3e-15 86.7 139 46.8
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.7e-15 86.3 129 47.3
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 2.2e-15 85.9 128 50.8
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 2.2e-15 85.9 128 50.8
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.9e-15 85.5 127 45.7
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 3.8e-15 85.1 127 45.7
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 2.5e-14 82.4 139 47.5
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 9.4e-14 80.5 126 48.4
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.7e-13 79.0 123 43.1
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.7e-13 79.0 123 43.1
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 7.9e-13 77.4 127 44.1
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 1.8e-12 76.3 125 44.0
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.0e-12 75.5 141 43.3
MELO3C024110.2 Cucumis melo HOM05D004793 ORTHO05D004423 3.9e-12 75.1 128 46.1
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 8.8e-12 73.9 137 42.3
Sed0008787 Sechium edule HOM05D004793 ORTHO05D004423 1.1e-11 73.6 124 45.2
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 2.0e-11 72.8 131 44.3
CsaV3_7G023710 Cucumis sativus L. HOM05D004793 ORTHO05D004423 7.4e-11 70.9 82 54.9
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 9.7e-11 70.5 127 40.9
ClCG02G002720 Citrullus lanatus HOM05D000222 ORTHO05D003997 2.8e-10 68.9 84 54.8
Gohir.A07G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.8e-10 68.9 120 46.7
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 3.7e-10 68.6 126 40.5
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 8.2e-10 67.4 125 40.0
Oeu057608.1 Olea europaea HOM05D004793 ORTHO05D004423 1.8e-09 66.2 117 42.7
Oeu064364.1 Olea europaea HOM05D004793 ORTHO05D004423 1.8e-09 66.2 117 42.7
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 1.8e-09 66.2 140 39.3
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 2.4e-09 65.9 132 37.9
Gorai.001G099200 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.4e-09 65.9 123 47.2
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 2.4e-09 65.9 144 38.9
Gohir.D07G092600 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.1e-09 65.1 123 47.2
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 5.3e-09 64.7 126 43.7
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.5e-08 63.2 126 38.1
CAN.G1397.7 Capsicum annuum HOM05D037802 ORTHO05D004423 2.0e-08 62.8 131 36.6
Cc02_g34950 Coffea canephora HOM05D004793 ORTHO05D004423 2.6e-08 62.4 140 37.1
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 4.5e-08 61.6 143 37.1
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 5.9e-08 61.2 73 47.9
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 5.9e-08 61.2 127 40.2
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.7e-08 60.8 122 37.7
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.0e-07 60.5 122 37.7
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 1.0e-07 60.5 137 35.0
Lsat_1_v5_gn_5_121620 Lactuca sativa HOM05D004793 ORTHO05D004423 1.0e-07 60.5 129 41.1
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.0e-07 60.5 138 38.4
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 1.3e-07 60.1 148 37.2
Eucgr.A01045 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.2e-07 59.3 137 38.7
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.9e-07 58.9 133 39.1
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.9e-07 58.9 143 35.7
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 2.9e-07 58.9 141 36.9
SalBow7G3719 Salvia bowleyana HOM05D004793 ORTHO05D004423 3.8e-07 58.5 116 38.8
CAN.G294.21 Capsicum annuum HOM05D004793 ORTHO05D004423 8.5e-07 57.4 126 38.9
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.1e-06 57.0 129 38.0
Rhsim04G0038500 Rhododendron simsii HOM05D004793 ORTHO05D004423 1.1e-06 57.0 123 44.7
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 1.4e-06 56.6 126 39.7
HPP92_012227 Vanilla planifolia HOM05D004793 ORTHO05D004423 1.4e-06 56.6 112 36.6
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.9e-06 56.2 130 37.7
Migut.M00035 Erythranthe guttata HOM05D004793 ORTHO05D004423 1.9e-06 56.2 125 37.6
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 1.9e-06 56.2 132 35.6
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.5e-06 55.8 131 38.9
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 2.5e-06 55.8 135 34.8
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 3.2e-06 55.5 135 34.1
DCAR_019706 Daucus carota HOM05D004793 ORTHO05D004423 5.5e-06 54.7 138 34.8
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 5.5e-06 54.7 122 42.6
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 7.2e-06 54.3 117 40.2
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 7.2e-06 54.3 115 41.7
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 7.2e-06 54.3 137 35.0
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 7.2e-06 54.3 43 65.1


User provided reference genes

Program Settings