Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.3e-21 105.5 54 100.0
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 1.4e-12 75.5 45 82.2
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 1.4e-12 75.5 45 82.2
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 3.2e-12 74.3 47 85.1
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 7.0e-12 73.2 44 84.1
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 1.2e-11 72.4 45 82.2
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.2e-11 72.4 45 86.7
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.0e-11 71.6 43 86.0
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 2.0e-11 71.6 45 80.0
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 2.7e-11 71.2 43 81.4
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 2.7e-11 71.2 43 81.4
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 2.7e-11 71.2 43 81.4
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 2.7e-11 71.2 43 81.4
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 5.9e-11 70.1 42 81.0
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 5.9e-11 70.1 42 81.0
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 5.9e-11 70.1 42 81.0
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 5.9e-11 70.1 42 81.0
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 5.9e-11 70.1 42 81.0
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 5.9e-11 70.1 42 81.0
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 5.9e-11 70.1 42 81.0
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 5.9e-11 70.1 42 81.0
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 5.9e-11 70.1 42 83.3
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 5.9e-11 70.1 42 81.0
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 5.9e-11 70.1 43 79.1
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 5.9e-11 70.1 43 79.1
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 5.9e-11 70.1 44 79.5
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 5.9e-11 70.1 42 81.0
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 1.0e-10 69.3 42 81.0
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.0e-10 69.3 45 77.8
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.0e-10 69.3 42 81.0
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.0e-10 69.3 45 77.8
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.0e-10 69.3 44 77.3
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 1.0e-10 69.3 46 73.9
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 1.0e-10 69.3 42 81.0
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 1.3e-10 68.9 44 84.1
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.3e-10 68.9 44 84.1
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 1.3e-10 68.9 42 85.7
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.3e-10 68.9 44 77.3
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.3e-10 68.9 42 78.6
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.7e-10 68.6 41 82.9
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.7e-10 68.6 40 82.5
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.7e-10 68.6 40 82.5
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.7e-10 68.6 40 82.5
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.7e-10 68.6 40 82.5
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 1.7e-10 68.6 42 81.0
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.7e-10 68.6 42 81.0
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.7e-10 68.6 43 76.7
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.7e-10 68.6 42 81.0
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 2.3e-10 68.2 40 82.5
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 2.3e-10 68.2 42 81.0
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 2.3e-10 68.2 42 78.6
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 2.3e-10 68.2 41 80.5
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 2.3e-10 68.2 43 76.7
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 2.3e-10 68.2 43 76.7
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.9e-10 67.8 42 76.2
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 2.9e-10 67.8 42 81.0
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 2.9e-10 67.8 42 78.6
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 3.9e-10 67.4 42 76.2
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 3.9e-10 67.4 40 82.5
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 3.9e-10 67.4 44 75.0
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 3.9e-10 67.4 43 81.4
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 3.9e-10 67.4 44 75.0
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 5.0e-10 67.0 42 76.2
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 5.0e-10 67.0 44 75.0
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.0e-10 67.0 42 76.2
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 5.0e-10 67.0 40 82.5
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 5.0e-10 67.0 42 76.2
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 5.0e-10 67.0 42 76.2
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 6.6e-10 66.6 43 74.4
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 6.6e-10 66.6 43 74.4
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 6.6e-10 66.6 43 76.7
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 6.6e-10 66.6 41 78.0
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 6.6e-10 66.6 43 76.7
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 6.6e-10 66.6 43 74.4
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 8.6e-10 66.2 40 82.5
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 8.6e-10 66.2 43 74.4
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 8.6e-10 66.2 43 74.4
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 8.6e-10 66.2 44 72.7
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 8.6e-10 66.2 42 73.8
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 8.6e-10 66.2 43 72.1
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 8.6e-10 66.2 43 72.1
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 8.6e-10 66.2 42 78.6
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 8.6e-10 66.2 41 78.0
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 8.6e-10 66.2 42 73.8
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.1e-09 65.9 41 78.0
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.1e-09 65.9 41 78.0
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.1e-09 65.9 41 78.0
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.1e-09 65.9 41 78.0
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.1e-09 65.9 41 78.0
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 1.1e-09 65.9 41 78.0
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.5e-09 65.5 43 72.1
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.5e-09 65.5 42 73.8
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.5e-09 65.5 44 75.0
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.9e-09 65.1 41 75.6
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.9e-09 65.1 42 76.2
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.9e-09 65.1 43 72.1
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 2.5e-09 64.7 41 75.6
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.5e-09 64.7 37 81.1
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 2.5e-09 64.7 40 77.5
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 3.3e-09 64.3 41 75.6
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 3.3e-09 64.3 41 75.6
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 4.3e-09 63.9 41 75.6
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.3e-09 63.9 44 72.7
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 5.6e-09 63.5 41 73.2
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 7.3e-09 63.2 40 80.0
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 9.5e-09 62.8 42 73.8
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 9.5e-09 62.8 42 73.8
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.2e-08 62.4 40 75.0
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.2e-08 62.4 41 75.6
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.6e-08 62.0 47 70.2
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 2.1e-08 61.6 46 69.6
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 3.6e-08 60.8 41 70.7
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.6e-08 60.8 40 72.5
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 8.0e-08 59.7 39 74.4
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.0e-07 59.3 40 70.0
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 3.1e-07 57.8 37 73.0
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.6e-06 54.7 39 71.8


User provided reference genes

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