Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P41VAN Arachis hypogaea HOM05D000144 ORTHO05D008991 3.0e-08 60.1 26 100.0
arahy.Tifrunner.gnm1.ann1.U7GRH4 Arachis hypogaea HOM05D000144 ORTHO05D008991 3.0e-08 60.1 26 100.0
Ca_23839_v3 Cicer arietinum L. HOM05D000144 ORTHO05D008991 3.0e-08 60.1 26 100.0
Glyma.01G144800 Glycine max HOM05D000144 ORTHO05D008991 3.0e-08 60.1 26 100.0
Lj3g0008659 Lotus japonicus HOM05D000144 ORTHO05D008991 3.0e-08 60.1 26 100.0
Medtr8g036015 Medicago truncatula HOM05D000144 ORTHO05D008991 3.0e-08 60.1 26 100.0
Phvul.010G085700 Phaseolus vulgaris HOM05D000144 ORTHO05D008991 3.0e-08 60.1 26 100.0
Psat4g149560 Pisum sativum HOM05D000144 ORTHO05D008991 3.0e-08 60.1 26 100.0
TPR.G13199 Trifolium pratense HOM05D000477 ORTHO05D411006 3.0e-08 60.1 26 100.0
TPR.G17467 Trifolium pratense HOM05D000144 ORTHO05D008991 3.0e-08 60.1 26 100.0
VMungo0251G1064 Vigna mungo HOM05D000144 ORTHO05D008991 3.0e-08 60.1 26 100.0
MSTRG.20760 Avicennia marina HOM05D000144 ORTHO05D008991 6.6e-08 58.9 26 96.2
Lalb_Chr07g0189641 Lupinus albus HOM05D000144 ORTHO05D008991 6.6e-08 58.9 26 96.2
MD02G1201300 Malus domestica HOM05D000144 ORTHO05D008991 6.6e-08 58.9 26 96.2
Oeu024648.1 Olea europaea HOM05D000144 ORTHO05D008991 6.6e-08 58.9 26 96.2
Prupe.2G147500 Prunus persica HOM05D000144 ORTHO05D008991 6.6e-08 58.9 26 96.2
QL08p051960 Quercus lobata HOM05D000477 ORTHO05D337589 6.6e-08 58.9 26 96.2
QL08p051969 Quercus lobata HOM05D000144 ORTHO05D008991 6.6e-08 58.9 26 96.2
Sc26g0001180 Simmondsia chinensis HOM05D000144 ORTHO05D008991 6.6e-08 58.9 26 96.2
SGA_v2.0_scaffold153G37029 Striga asiatica HOM05D000144 ORTHO05D008991 6.6e-08 58.9 26 96.2
THA.LOC104814086 Tarenaya hassleriana HOM05D000144 ORTHO05D008991 6.6e-08 58.9 26 96.2
FvH4_7g12100 Fragaria vesca HOM05D000144 ORTHO05D008991 8.6e-08 58.5 26 92.3
FAN06G1481 Fragaria x ananassa HOM05D000144 ORTHO05D008991 8.6e-08 58.5 26 92.3
FAN06G3904 Fragaria x ananassa HOM05D000144 ORTHO05D008991 8.6e-08 58.5 26 92.3
FAN10G0727 Fragaria x ananassa HOM05D000144 ORTHO05D008991 8.6e-08 58.5 26 92.3
Glyma.03G022052 Glycine max HOM05D000144 ORTHO05D008991 8.6e-08 58.5 26 96.2
RcHm_v2.0_Chr1g0350841 Rosa chinensis HOM05D000144 ORTHO05D008991 8.6e-08 58.5 26 92.3
DCAR_025117 Daucus carota HOM05D000144 ORTHO05D008991 1.1e-07 58.2 26 96.2
Mapoly0003s0263 Marchantia polymorpha HOM05D000144 ORTHO05D008991 1.1e-07 58.2 26 96.2
Migut.B01648 Erythranthe guttata HOM05D000144 ORTHO05D008991 1.5e-07 57.8 26 92.3
Nitab4.5_0004859g0060 Nicotiana tabacum HOM05D000144 ORTHO05D008991 1.5e-07 57.8 26 92.3
Peaxi162Scf00045g01436 Petunia axillaris HOM05D000144 ORTHO05D008991 1.5e-07 57.8 26 92.3
SalBow5G4519 Salvia bowleyana HOM05D000144 ORTHO05D008991 1.5e-07 57.8 26 92.3
Solyc08g006090.3 Solanum lycopersicum HOM05D000144 ORTHO05D008991 1.5e-07 57.8 26 92.3
Sopen08g002060 Solanum pennellii HOM05D000144 ORTHO05D008991 1.5e-07 57.8 26 92.3
PGSC0003DMG400014848 Solanum tuberosum HOM05D000144 ORTHO05D008991 1.5e-07 57.8 26 92.3
AL1G10380 Arabidopsis lyrata HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
AT1G01940 Arabidopsis thaliana HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
BcaC07g42348 Brassica carinata HOM05D000108 ORTHO05D001724 1.9e-07 57.4 26 92.3
C08p53950 Brassica napus HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
BolC8t52908H Brassica oleracea HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
CANSAT56G3055 Cannabis sativa HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
Carub.0001s0030 Capsella rubella HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
CARHR000410 Cardamine hirsuta HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
CBR_g50125 Chara braunii HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
ClCG05G002110 Citrullus lanatus HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
MELO3C006176.2 Cucumis melo HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
Thhalv10008970m.g Eutrema salsugineum HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
Sp1g00360 Schrenkiella parvula HOM05D000144 ORTHO05D008991 1.9e-07 57.4 26 92.3
Aa31LG1G11260 Aethionema arabicum HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 88.5
AagrBONN_evm.TU.Sc2ySwM_117.389 Anthoceros agrestis HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 92.3
Aqoxy7G00584 Aquilegia oxysepala HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 96.2
EL10Ac1g00939 Beta vulgaris HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 92.3
Cpa.g.sc18.137 Carica papaya HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 92.3
CiPaw.01G260500 Carya illinoinensis HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 92.3
CiPaw.02G166300 Carya illinoinensis HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 92.3
AUR62004231 Chenopodium quinoa HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 92.3
AUR62013617 Chenopodium quinoa HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 92.3
Cc02_g36530 Coffea canephora HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 92.3
COL.COLO4_12573 Corchorus olitorius HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 92.3
Haze_16832 Corylus avellana HOM05D000144 ORTHO05D008991 2.5e-07 57.0 26 92.3
FAN03G2943 Fragaria x ananassa HOM05D000144 ORTHO05D008991 3.3e-07 56.6 25 92.0
SMO358G0449 Selaginella moellendorffii HOM05D000144 ORTHO05D008991 3.3e-07 56.6 25 92.0
Zm00001eb269630 Zea mays HOM05D000144 ORTHO05D008991 4.3e-07 56.2 26 84.6
Zm00001eb378260 Zea mays HOM05D000144 ORTHO05D008991 4.3e-07 56.2 26 84.6
Atru.chr5.326 Acer truncatum HOM05D000144 ORTHO05D008991 5.6e-07 55.8 26 92.3
Ciclev10022618m.g Citrus clementina HOM05D000144 ORTHO05D008991 5.6e-07 55.8 26 92.3
Duzib133G1311 Durio zibethinus HOM05D000144 ORTHO05D008991 5.6e-07 55.8 26 92.3
Eucgr.E01408 Eucalyptus grandis HOM05D000144 ORTHO05D008991 5.6e-07 55.8 26 88.5
Gohir.A08G133100 Gossypium hirsutum HOM05D000144 ORTHO05D008991 5.6e-07 55.8 26 92.3
Gohir.D08G154400 Gossypium hirsutum HOM05D000144 ORTHO05D008991 5.6e-07 55.8 26 92.3
Gorai.004G160500 Gossypium raimondii HOM05D000144 ORTHO05D008991 5.6e-07 55.8 26 92.3
Thecc.01G374300 Theobroma cacao HOM05D000144 ORTHO05D008991 5.6e-07 55.8 26 92.3
TAR629G2387 Trochodendron aralioides HOM05D000144 ORTHO05D008991 5.6e-07 55.8 26 92.3
HPP92_001548 Vanilla planifolia HOM05D000144 ORTHO05D008991 5.6e-07 55.8 26 92.3
BraA09t42270Z Brassica rapa HOM05D000144 ORTHO05D008991 7.3e-07 55.5 25 92.0
Ah.05g175120 Amaranthus hybridus HOM05D000144 ORTHO05D008991 9.5e-07 55.1 25 92.0
ECA240G0193 Erigeron canadensis HOM05D000144 ORTHO05D008991 9.5e-07 55.1 26 92.3
HanXRQChr03g0093801 Helianthus annuus HOM05D000144 ORTHO05D008991 9.5e-07 55.1 26 92.3
PSO478G0562 Papaver somniferum HOM05D000144 ORTHO05D008991 9.5e-07 55.1 26 92.3
PSO782G5546 Papaver somniferum HOM05D000144 ORTHO05D008991 9.5e-07 55.1 26 92.3
Potri.002G149700 Populus trichocarpa HOM05D000144 ORTHO05D008991 9.5e-07 55.1 26 92.3
Potri.014G071600 Populus trichocarpa HOM05D000144 ORTHO05D008991 9.5e-07 55.1 26 92.3
Sabra14G0050800 Salix brachista HOM05D000144 ORTHO05D008991 9.5e-07 55.1 26 92.3
Os06g0130500 Oryza sativa ssp. japonica HOM05D000144 ORTHO05D008991 1.2e-06 54.7 26 80.8
PGR042G2090 Punica granatum HOM05D000144 ORTHO05D008991 1.6e-06 54.3 26 88.5
Sed0021116 Sechium edule HOM05D000144 ORTHO05D008991 1.6e-06 54.3 26 88.5
Lj9C572T11 Lonicera japonica HOM05D000144 ORTHO05D008991 2.1e-06 53.9 26 88.5
Hund27353 Selenicereus undatus HOM05D000144 ORTHO05D008991 2.1e-06 53.9 25 88.0
Nn1g01186 Nelumbo nucifera HOM05D000144 ORTHO05D008991 2.8e-06 53.5 26 84.6
Actinidia12695 Actinidia chinensis HOM05D000144 ORTHO05D008991 4.7e-06 52.8 26 84.6
Actinidia33459 Actinidia chinensis HOM05D000144 ORTHO05D008991 4.7e-06 52.8 26 84.6
Rhsim07G0025800 Rhododendron simsii HOM05D000144 ORTHO05D008991 4.7e-06 52.8 26 84.6
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 4.7e-06 52.8 25 88.0
vmacro13386 Vaccinium macrocarpon HOM05D000144 ORTHO05D008991 4.7e-06 52.8 26 84.6
GSVIVG01027530001 Vitis vinifera HOM05D000144 ORTHO05D008991 4.7e-06 52.8 26 88.5
Pp3c14_5290 Physcomitrium patens HOM05D000144 ORTHO05D008991 8.1e-06 52.0 26 80.8
TWI59G0270 Tripterygium wilfordii HOM05D000144 ORTHO05D008991 8.1e-06 52.0 26 84.6


User provided reference genes

Program Settings