Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13182 Trifolium pratense HOM05D001756 ORTHO05D001581 6.7e-35 150.2 80 100.0
Medtr1g017590 Medicago truncatula HOM05D001756 ORTHO05D001581 1.1e-26 122.9 77 80.5
Medtr1g017700 Medicago truncatula HOM05D001756 ORTHO05D001581 5.3e-16 87.4 77 63.6
TPR.G22954 Trifolium pratense HOM05D001756 ORTHO05D001581 1.3e-14 82.8 77 62.3
Glyma.17G233400 Glycine max HOM05D001756 ORTHO05D001581 2.2e-14 82.0 75 65.3
Psat0s2637g0040 Pisum sativum HOM05D001756 ORTHO05D001581 1.1e-13 79.7 77 57.1
Glyma.14G089063 Glycine max HOM05D001756 ORTHO05D001581 1.9e-13 79.0 74 59.5
Glyma.06G048200 Glycine max HOM05D001756 ORTHO05D001581 7.2e-13 77.0 77 55.8
arahy.Tifrunner.gnm1.ann1.HNL259 Arachis hypogaea HOM05D001756 ORTHO05D001581 3.6e-12 74.7 84 53.6
Glyma.17G233500 Glycine max HOM05D001756 ORTHO05D001581 1.4e-11 72.8 74 56.8
arahy.Tifrunner.gnm1.ann1.200WTN Arachis hypogaea HOM05D001756 ORTHO05D001581 2.3e-11 72.0 83 54.2
Lalb_Chr08g0245221 Lupinus albus HOM05D001756 ORTHO05D001581 2.3e-11 72.0 74 55.4
arahy.Tifrunner.gnm1.ann1.APU27B Arachis hypogaea HOM05D001756 ORTHO05D001581 5.2e-11 70.9 83 53.0
Lalb_Chr11g0062971 Lupinus albus HOM05D001756 ORTHO05D001581 1.5e-10 69.3 75 48.0
Lalb_Chr22g0355741 Lupinus albus HOM05D001756 ORTHO05D001581 2.0e-10 68.9 81 49.4
arahy.Tifrunner.gnm1.ann1.Y577NZ Arachis hypogaea HOM05D001756 ORTHO05D001581 4.4e-10 67.8 81 51.9
QL12p038416 Quercus lobata HOM05D001756 ORTHO05D001581 1.7e-09 65.9 76 47.4
Lj5g0015089 Lotus japonicus HOM05D001756 ORTHO05D001581 2.8e-09 65.1 75 50.7
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 4.8e-09 64.3 78 46.2
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 6.3e-09 63.9 77 48.1
CSS0000381 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 8.2e-09 63.5 78 46.2
Thhalv10010875m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 2.4e-08 62.0 77 49.4
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 5.3e-08 60.8 74 50.0
Sabra02G0091600 Salix brachista HOM05D001756 ORTHO05D001581 5.3e-08 60.8 74 54.1
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 9.1e-08 60.1 77 48.1
Dinv09540 Davidia involucrata HOM05D001756 ORTHO05D001581 9.1e-08 60.1 79 50.6
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 1.2e-07 59.7 74 48.6
Sp5g12310 Schrenkiella parvula HOM05D001756 ORTHO05D001581 1.2e-07 59.7 77 46.8
CiPaw.02G001200 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.6e-07 59.3 79 46.8
CiPaw.07G172800 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.6e-07 59.3 75 49.3
Gohir.D06G022100 Gossypium hirsutum HOM05D001756 ORTHO05D001581 1.6e-07 59.3 76 44.7
Gorai.010G026700 Gossypium raimondii HOM05D001756 ORTHO05D001581 1.6e-07 59.3 76 44.7
Hma1.2p1_1051F.1_g252120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.6e-07 59.3 76 44.7
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 1.6e-07 59.3 77 46.8
Carub.0005s1613 Capsella rubella HOM05D001756 ORTHO05D001581 2.0e-07 58.9 77 49.4
Duzib093G0345 Durio zibethinus HOM05D001756 ORTHO05D001581 2.0e-07 58.9 74 48.6
Duzib116G0348 Durio zibethinus HOM05D001756 ORTHO05D001581 2.0e-07 58.9 76 44.7
Potri.002G116300 Populus trichocarpa HOM05D001756 ORTHO05D001581 2.0e-07 58.9 74 51.4
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 2.0e-07 58.9 76 47.4
arahy.Tifrunner.gnm1.ann1.IGD037 Arachis hypogaea HOM05D001756 ORTHO05D001581 2.7e-07 58.5 81 50.6
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 2.7e-07 58.5 77 46.8
CiPaw.01G002400 Carya illinoinensis HOM05D001756 ORTHO05D001581 2.7e-07 58.5 80 50.0
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 2.7e-07 58.5 77 46.8
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 3.5e-07 58.2 75 48.0
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 3.5e-07 58.2 77 50.6
Sopen04g031220 Solanum pennellii HOM05D001756 ORTHO05D001581 3.5e-07 58.2 80 50.0
A01p24530 Brassica napus HOM05D001756 ORTHO05D001581 4.5e-07 57.8 77 48.1
BraA01t02363Z Brassica rapa HOM05D001756 ORTHO05D001581 4.5e-07 57.8 77 48.1
Cfa004383 Carpinus fangiana HOM05D001756 ORTHO05D001581 4.5e-07 57.8 74 47.3
COL.COLO4_28472 Corchorus olitorius HOM05D001756 ORTHO05D001581 4.5e-07 57.8 74 51.4
Gohir.D05G214800 Gossypium hirsutum HOM05D001756 ORTHO05D001581 4.5e-07 57.8 76 47.4
CAN.G1343.3 Capsicum annuum HOM05D001756 ORTHO05D001581 7.7e-07 57.0 81 44.4
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 7.7e-07 57.0 76 50.0
Gohir.A05G211500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 7.7e-07 57.0 76 47.4
Gohir.A06G025000 Gossypium hirsutum HOM05D001756 ORTHO05D001581 7.7e-07 57.0 76 43.4
Peaxi162Scf00340g00412 Petunia axillaris HOM05D001756 ORTHO05D001581 7.7e-07 57.0 77 48.1
Solyc02g092110.3 Solanum lycopersicum HOM05D001756 ORTHO05D001581 7.7e-07 57.0 82 47.6
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 7.7e-07 57.0 77 45.5
Atru.chr5.2299 Acer truncatum HOM05D001756 ORTHO05D001581 1.0e-06 56.6 81 46.9
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.0e-06 56.6 78 50.0
Ciclev10026870m.g Citrus clementina HOM05D001756 ORTHO05D001581 1.0e-06 56.6 72 44.4
PGR142G2395 Punica granatum HOM05D001756 ORTHO05D001581 1.0e-06 56.6 73 45.2
Nitab4.5_0002525g0020 Nicotiana tabacum HOM05D001756 ORTHO05D001581 1.3e-06 56.2 76 43.4
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 1.3e-06 56.2 76 48.7
Rhsim06G0064100 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.3e-06 56.2 75 45.3
Rhsim06G0064200 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.3e-06 56.2 75 49.3
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.3e-06 56.2 75 46.7
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.3e-06 56.2 75 46.7
Solyc04g077580.3 Solanum lycopersicum HOM05D001756 ORTHO05D001581 1.3e-06 56.2 80 48.8
C01p30590 Brassica napus HOM05D001756 ORTHO05D001581 1.7e-06 55.8 77 46.8
BolC1t02995H Brassica oleracea HOM05D001756 ORTHO05D001581 1.7e-06 55.8 77 46.8
Gorai.009G221500 Gossypium raimondii HOM05D001756 ORTHO05D001581 1.7e-06 55.8 76 47.4
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 1.7e-06 55.8 80 46.2
PGSC0003DMG400021407 Solanum tuberosum HOM05D001756 ORTHO05D001581 1.7e-06 55.8 84 44.0
GSVIVG01037055001 Vitis vinifera HOM05D001756 ORTHO05D001581 1.7e-06 55.8 77 46.8
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 2.2e-06 55.5 77 44.2
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 2.2e-06 55.5 77 44.2
Phvul.001G029200 Phaseolus vulgaris HOM05D001756 ORTHO05D001581 2.2e-06 55.5 75 50.7
Potri.014G006900 Populus trichocarpa HOM05D001756 ORTHO05D001581 2.2e-06 55.5 76 47.4
Thecc.08G085400 Theobroma cacao HOM05D001756 ORTHO05D001581 2.2e-06 55.5 76 43.4
CSS0039448 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.9e-06 55.1 75 48.0
Cc02_g20030 Coffea canephora HOM05D001756 ORTHO05D001581 2.9e-06 55.1 80 45.0
Sc15g0005410 Simmondsia chinensis HOM05D001756 ORTHO05D001581 2.9e-06 55.1 75 46.7
Dinv16070 Davidia involucrata HOM05D001756 ORTHO05D001581 3.8e-06 54.7 79 45.6
Gohir.A12G078300 Gossypium hirsutum HOM05D001756 ORTHO05D001581 3.8e-06 54.7 86 41.9
Lj7A111T6 Lonicera japonica HOM05D001756 ORTHO05D001581 3.8e-06 54.7 74 48.6
Sopen02g036710 Solanum pennellii HOM05D001756 ORTHO05D001581 3.8e-06 54.7 79 49.4
PGSC0003DMG400021406 Solanum tuberosum HOM05D001756 ORTHO05D001581 3.8e-06 54.7 82 46.3
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 5.0e-06 54.3 77 42.9
HanXRQChr09g0255351 Helianthus annuus HOM05D001756 ORTHO05D001581 5.0e-06 54.3 76 43.4
Nitab4.5_0009491g0010 Nicotiana tabacum HOM05D001756 ORTHO05D001581 5.0e-06 54.3 78 42.3
Peaxi162Scf00340g00059 Petunia axillaris HOM05D001756 ORTHO05D001581 5.0e-06 54.3 77 45.5
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 5.0e-06 54.3 76 48.7
Sabra16G0181600 Salix brachista HOM05D001756 ORTHO05D001581 5.0e-06 54.3 76 44.7
PGSC0003DMG400004941 Solanum tuberosum HOM05D001756 ORTHO05D001581 5.0e-06 54.3 77 46.8
Actinidia11965 Actinidia chinensis HOM05D001756 ORTHO05D001581 6.5e-06 53.9 84 44.0
AL5G29770 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 6.5e-06 53.9 79 44.3
arahy.Tifrunner.gnm1.ann1.WWP4H1 Arachis hypogaea HOM05D001756 ORTHO05D001581 6.5e-06 53.9 79 44.3
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 6.5e-06 53.9 76 46.1
Eucgr.I00676 Eucalyptus grandis HOM05D001756 ORTHO05D001581 6.5e-06 53.9 78 43.6
Solyc01g106830.4 Solanum lycopersicum HOM05D001756 ORTHO05D001581 6.5e-06 53.9 78 48.7
BcaB05g23153 Brassica carinata HOM05D001756 ORTHO05D001581 8.5e-06 53.5 70 48.6
CAN.G1343.2 Capsicum annuum HOM05D001756 ORTHO05D001581 8.5e-06 53.5 81 45.7
ECA246G3808 Erigeron canadensis HOM05D001756 ORTHO05D001581 8.5e-06 53.5 75 46.7
Nn5g30652 Nelumbo nucifera HOM05D001756 ORTHO05D001581 8.5e-06 53.5 74 44.6
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 8.5e-06 53.5 77 44.2
PGSC0003DMG400025738 Solanum tuberosum HOM05D001756 ORTHO05D001581 8.5e-06 53.5 78 48.7


User provided reference genes

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