Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 9.9e-272 939.5 464 100.0
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 7.2e-222 773.9 468 81.0
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 1.4e-220 769.6 472 80.3
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 2.8e-218 761.9 476 78.8
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 1.0e-188 663.7 474 70.7
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 2.7e-176 622.5 478 65.5
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 2.3e-167 592.8 453 65.3
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 1.1e-166 590.5 479 63.9
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 2.0e-163 579.7 455 64.0
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 3.5e-160 568.9 465 63.2
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 1.7e-154 550.1 478 60.0
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 3.7e-154 548.9 486 58.4
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 9.2e-153 544.3 431 65.9
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 4.6e-152 542.0 474 58.6
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 2.3e-151 539.7 488 58.2
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 8.6e-151 537.7 473 58.1
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 3.3e-150 535.8 474 58.2
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 1.4e-148 530.4 472 57.4
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 6.8e-148 528.1 472 57.4
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 2.6e-147 526.2 479 58.7
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 1.3e-146 523.9 469 57.4
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.6e-144 516.9 486 57.0
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 4.6e-144 515.4 453 59.4
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.0e-143 512.7 489 56.0
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 3.0e-143 512.7 471 57.3
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 2.4e-140 503.1 478 54.0
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 2.6e-139 499.6 480 55.6
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 2.6e-139 499.6 467 55.5
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 2.2e-138 496.5 478 55.2
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 2.9e-138 496.1 484 55.4
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 4.9e-138 495.4 473 55.6
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 6.4e-138 495.0 482 55.6
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 6.4e-138 495.0 473 55.4
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 1.1e-137 494.2 475 55.6
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 1.4e-137 493.8 463 56.2
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 9.3e-137 491.1 488 54.1
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 1.3e-135 487.3 474 55.1
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 1.7e-135 486.9 474 54.4
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 3.0e-135 486.1 488 53.9
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 8.7e-135 484.6 467 55.5
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 2.5e-134 483.0 470 53.6
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 9.6e-134 481.1 475 53.9
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 6.2e-133 478.4 479 53.0
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 3.1e-132 476.1 457 53.6
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 6.9e-132 474.9 459 54.5
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 4.5e-131 472.2 471 52.7
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 4.5e-131 472.2 453 54.3
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 1.7e-130 470.3 464 54.5
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 2.9e-130 469.5 477 52.2
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 6.4e-130 468.4 470 52.8
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 6.4e-130 468.4 460 53.0
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 8.4e-130 468.0 470 53.0
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 1.1e-129 467.6 453 54.3
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 3.2e-129 466.1 476 52.7
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 4.2e-129 465.7 470 52.6
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 2.7e-128 463.0 472 51.5
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 3.5e-128 462.6 469 51.6
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 3.5e-128 462.6 469 51.8
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 4.6e-128 462.2 467 51.8
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 6.0e-128 461.8 472 51.3
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 6.0e-128 461.8 478 53.6
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 6.0e-128 461.8 473 51.8
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 5.1e-127 458.8 463 51.6
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 6.7e-127 458.4 467 51.4
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 2.5e-126 456.4 469 52.0
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 3.3e-126 456.1 469 52.0
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 5.6e-126 455.3 467 51.2
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 8.1e-125 451.4 461 51.8
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 3.8e-122 442.6 464 51.7
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 1.8e-119 433.7 456 49.1
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 1.8e-119 433.7 472 51.3
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 3.9e-119 432.6 460 51.3
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 1.3e-117 427.6 466 50.2
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 5.7e-110 402.1 464 47.6
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 7.4e-110 401.7 464 47.2
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 9.7e-110 401.4 483 47.0
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 2.2e-109 400.2 479 46.3
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 2.4e-108 396.7 452 47.6
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 4.1e-108 396.0 464 46.6
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 9.0e-108 394.8 457 47.0
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 1.3e-106 391.0 451 45.9
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 1.4e-105 387.5 459 47.3
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 2.5e-105 386.7 458 47.4
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 5.5e-105 385.6 451 44.8
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 7.2e-105 385.2 454 45.2
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 7.2e-105 385.2 454 45.2
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 2.3e-103 380.2 451 44.6
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 3.0e-103 379.8 452 45.1
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 3.9e-103 379.4 459 45.5
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 9.1e-100 368.2 465 43.4
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 4.5e-99 365.9 442 46.8
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 5.9e-99 365.5 421 48.0
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 2.2e-98 363.6 303 61.4
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 3.2e-97 359.8 508 42.7
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 5.5e-97 359.0 454 44.5
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 7.0e-92 342.0 459 42.5
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 5.9e-91 339.0 332 54.5
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 1.4e-87 327.8 354 49.7
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 6.7e-87 325.5 451 42.1
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 1.8e-76 290.8 319 52.4
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 1.1e-68 265.0 288 50.3
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.9e-66 256.9 281 52.0
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 1.2e-62 245.0 493 33.9
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 5.7e-62 242.7 328 43.3
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 3.5e-59 233.4 249 52.2
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 8.3e-53 212.2 461 33.4
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 2.3e-47 194.1 224 52.7
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 1.2e-46 191.8 528 29.9
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 2.1e-40 171.0 358 31.3
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.9e-36 157.9 164 51.2
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 3.1e-31 140.6 553 23.3
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 5.2e-31 139.8 197 43.7
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 5.8e-30 136.3 104 58.7
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 2.4e-28 131.0 148 43.9
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 9.3e-28 129.0 99 58.6
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 3.8e-21 107.1 228 35.1
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 6.4e-21 106.3 138 42.8
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 5.1e-18 96.7 79 63.3
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 6.7e-18 96.3 119 42.0
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 8.7e-18 95.9 82 61.0
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 7.4e-17 92.8 105 46.7
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.3e-16 92.0 65 60.0
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 9.0e-15 85.9 172 30.8
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 3.4e-14 84.0 98 46.9
Oeu037483.1 Olea europaea HOM05D006323 ORTHO05D007827 1.8e-10 71.6 120 42.5


User provided reference genes

Program Settings