Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1314 Trifolium pratense HOM05D046803 ORTHO05D025198 1.8e-96 355.9 182 100.0
TPR.G1308 Trifolium pratense HOM05D046803 ORTHO05D025198 1.2e-42 177.2 85 98.8
TPR.G12146 Trifolium pratense HOM05D000163 ORTHO05D000219 2.7e-23 112.8 60 91.7
Medtr3g008270 Medicago truncatula HOM05D000163 ORTHO05D000219 1.1e-21 107.5 60 86.7
Psat5g228520 Pisum sativum HOM05D000163 ORTHO05D000219 3.1e-19 99.4 60 83.3
Ca_14072_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 2.6e-18 96.3 60 80.0
TPR.G12258 Trifolium pratense HOM05D000163 ORTHO05D000219 5.4e-16 88.6 65 72.3
Lalb_Chr04g0264271 Lupinus albus HOM05D000163 ORTHO05D000219 6.0e-15 85.1 60 70.0
Lalb_Chr18g0048941 Lupinus albus HOM05D000163 ORTHO05D000219 3.0e-14 82.8 60 68.3
Lj3g0002939 Lotus japonicus HOM05D000163 ORTHO05D000219 3.9e-14 82.4 65 69.2
Medtr3g008280 Medicago truncatula HOM05D000163 ORTHO05D000219 6.7e-14 81.6 65 69.2
Glyma.04G121100 Glycine max HOM05D000163 ORTHO05D000219 8.7e-14 81.3 65 67.7
Psat5g228440 Pisum sativum HOM05D000163 ORTHO05D000219 1.1e-13 80.9 62 69.4
VMungo1080G0917 Vigna mungo HOM05D000163 ORTHO05D000219 1.9e-13 80.1 66 65.2
Phvul.005G008900 Phaseolus vulgaris HOM05D000163 ORTHO05D000219 2.5e-13 79.7 67 65.7
arahy.Tifrunner.gnm1.ann1.718N46 Arachis hypogaea HOM05D000163 ORTHO05D000219 4.3e-13 79.0 66 62.1
arahy.Tifrunner.gnm1.ann1.E0MR6R Arachis hypogaea HOM05D000163 ORTHO05D000219 7.4e-13 78.2 66 62.1
Ca_14073_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 2.1e-12 76.6 65 67.7
Glyma.06G317700 Glycine max HOM05D000163 ORTHO05D000219 1.1e-11 74.3 53 71.7
FAN01G0457 Fragaria x ananassa HOM05D000163 ORTHO05D000219 2.4e-11 73.2 59 59.3
RcHm_v2.0_Chr1g0373831 Rosa chinensis HOM05D000163 ORTHO05D000219 2.4e-11 73.2 59 61.0
FvH4_7g27030 Fragaria vesca HOM05D000163 ORTHO05D000219 3.1e-11 72.8 59 59.3
FAN06G0137 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.1e-11 72.8 59 59.3
FAN06G4854 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.1e-11 72.8 59 59.3
CSS0050522 Camellia sinensis var. sinensis HOM05D000163 ORTHO05D000219 9.0e-11 71.2 48 68.8
FAN03G0866 Fragaria x ananassa HOM05D000163 ORTHO05D000219 1.2e-10 70.9 59 57.6
Duzib084G0920 Durio zibethinus HOM05D000163 ORTHO05D000219 1.5e-10 70.5 49 65.3
Lsat_1_v5_gn_2_127720 Lactuca sativa HOM05D000163 ORTHO05D000219 1.5e-10 70.5 59 64.4
TAR093G0003 Trochodendron aralioides HOM05D000163 ORTHO05D025198 1.5e-10 70.5 49 61.2
CiPaw.07G185800 Carya illinoinensis HOM05D000163 ORTHO05D000219 2.0e-10 70.1 50 66.0
TAR375G0633 Trochodendron aralioides HOM05D000163 ORTHO05D000219 2.0e-10 70.1 48 62.5
CSS0038263 Camellia sinensis var. sinensis HOM05D000163 ORTHO05D000219 2.6e-10 69.7 48 66.7
Prupe.2G273400 Prunus persica HOM05D000163 ORTHO05D000219 2.6e-10 69.7 46 69.6
FAN10G3212 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.4e-10 69.3 59 57.6
Ciclev10004338m.g Citrus clementina HOM05D000163 ORTHO05D000219 4.5e-10 68.9 50 62.0
Dinv06585 Davidia involucrata HOM05D000163 ORTHO05D000219 4.5e-10 68.9 48 64.6
Eucgr.K00132 Eucalyptus grandis HOM05D000163 ORTHO05D000219 5.8e-10 68.6 46 67.4
Haze_22186 Corylus avellana HOM05D041408 ORTHO05D025198 7.6e-10 68.2 46 71.7
Nitab4.5_0002211g0130 Nicotiana tabacum HOM05D000163 ORTHO05D000219 7.6e-10 68.2 56 60.7
Nitab4.5_0003647g0040 Nicotiana tabacum HOM05D000163 ORTHO05D000219 7.6e-10 68.2 56 60.7
vmacro06830 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 7.6e-10 68.2 47 68.1
MD07G1249700 Malus domestica HOM05D000163 ORTHO05D000219 9.9e-10 67.8 46 69.6
Nn1g00899 Nelumbo nucifera HOM05D000163 ORTHO05D000219 9.9e-10 67.8 48 60.4
Nitab4.5_0005717g0010 Nicotiana tabacum HOM05D000163 ORTHO05D000219 9.9e-10 67.8 45 71.1
Peaxi162Scf00167g00725 Petunia axillaris HOM05D000163 ORTHO05D000219 9.9e-10 67.8 56 58.9
TPR.G15218 Trifolium pratense HOM05D002208 ORTHO05D002333 9.9e-10 67.8 76 44.7
Atru.chr1.864 Acer truncatum HOM05D000163 ORTHO05D000219 1.7e-09 67.0 46 67.4
CiPaw.08G041200 Carya illinoinensis HOM05D000163 ORTHO05D000219 1.7e-09 67.0 66 56.1
Gohir.A07G042900 Gossypium hirsutum HOM05D000163 ORTHO05D000219 1.7e-09 67.0 48 64.6
Gohir.D07G047200 Gossypium hirsutum HOM05D000163 ORTHO05D000219 2.2e-09 66.6 48 62.5
Gorai.001G050300 Gossypium raimondii HOM05D000163 ORTHO05D000219 2.2e-09 66.6 48 62.5
QL09p028212 Quercus lobata HOM05D000163 ORTHO05D000219 2.2e-09 66.6 45 73.3
SalBow5G0896 Salvia bowleyana HOM05D000163 ORTHO05D000219 2.2e-09 66.6 60 51.7
vmacro22352 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 2.2e-09 66.6 48 62.5
Cfa013568 Carpinus fangiana HOM05D000163 ORTHO05D000219 2.9e-09 66.2 46 69.6
ECA240G3579 Erigeron canadensis HOM05D000163 ORTHO05D000219 2.9e-09 66.2 47 63.8
HanXRQChr07g0205451 Helianthus annuus HOM05D000163 ORTHO05D000219 2.9e-09 66.2 48 62.5
GSVIVG01014020001 Vitis vinifera HOM05D000163 ORTHO05D000219 2.9e-09 66.2 45 64.4
Actinidia13603 Actinidia chinensis HOM05D000163 ORTHO05D000219 3.8e-09 65.9 48 62.5
Rhsim03G0162500 Rhododendron simsii HOM05D000163 ORTHO05D000219 3.8e-09 65.9 48 62.5
BcaC04g23443 Brassica carinata HOM05D000163 ORTHO05D000219 4.9e-09 65.5 47 68.1
CSS0030770 Camellia sinensis var. sinensis HOM05D000163 ORTHO05D000219 4.9e-09 65.5 48 58.3
CAN.G485.18 Capsicum annuum HOM05D000163 ORTHO05D000219 4.9e-09 65.5 45 68.9
MD01G1177900 Malus domestica HOM05D000163 ORTHO05D000219 4.9e-09 65.5 46 63.0
A09p07340 Brassica napus HOM05D000163 ORTHO05D000219 6.4e-09 65.1 46 67.4
BraA09t36389Z Brassica rapa HOM05D000163 ORTHO05D000219 6.4e-09 65.1 46 67.4
ClCG01G004570 Citrullus lanatus HOM05D000163 ORTHO05D000219 6.4e-09 65.1 76 47.4
Peaxi162Scf00271g00733 Petunia axillaris HOM05D000163 ORTHO05D000219 6.4e-09 65.1 45 68.9
Cpa.g.sc13.270 Carica papaya HOM05D000163 ORTHO05D000219 8.4e-09 64.7 47 63.8
Cc02_g04620 Coffea canephora HOM05D000163 ORTHO05D000219 8.4e-09 64.7 46 69.6
Nitab4.5_0003173g0080 Nicotiana tabacum HOM05D000163 ORTHO05D000219 8.4e-09 64.7 45 66.7
Sopen03g024280 Solanum pennellii HOM05D000163 ORTHO05D000219 8.4e-09 64.7 45 68.9
Thecc.03G149900 Theobroma cacao HOM05D000163 ORTHO05D000219 8.4e-09 64.7 48 62.5
CAN.G937.9 Capsicum annuum HOM05D000163 ORTHO05D000219 1.1e-08 64.3 46 65.2
Eucgr.A02915 Eucalyptus grandis HOM05D000163 ORTHO05D000219 1.1e-08 64.3 47 63.8
ClCG01G004610 Citrullus lanatus HOM05D000163 ORTHO05D000219 1.4e-08 63.9 61 52.5
DCAR_020176 Daucus carota HOM05D000163 ORTHO05D000219 1.4e-08 63.9 46 67.4
ECA238G3402 Erigeron canadensis HOM05D000163 ORTHO05D000219 1.4e-08 63.9 47 61.7
Solyc03g093450.3 Solanum lycopersicum HOM05D000163 ORTHO05D000219 1.4e-08 63.9 45 68.9
Solyc05g051610.3 Solanum lycopersicum HOM05D000163 ORTHO05D000219 1.4e-08 63.9 56 55.4
PGSC0003DMG400007217 Solanum tuberosum HOM05D000163 ORTHO05D000219 1.4e-08 63.9 56 55.4
PGSC0003DMG400018850 Solanum tuberosum HOM05D000163 ORTHO05D000219 1.4e-08 63.9 45 68.9
SGA_v2.0_scaffold44G16572 Striga asiatica HOM05D000163 ORTHO05D000219 1.4e-08 63.9 63 50.8
vmacro22351 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 1.4e-08 63.9 88 42.0
Dinv16861 Davidia involucrata HOM05D000163 ORTHO05D000219 1.9e-08 63.5 48 62.5
Medtr7g014950 Medicago truncatula HOM05D000163 ORTHO05D000219 1.9e-08 63.5 40 77.5
TWI39G1129 Tripterygium wilfordii HOM05D000163 ORTHO05D000219 1.9e-08 63.5 47 63.8
MSTRG.8840 Avicennia marina HOM05D000163 ORTHO05D000219 2.4e-08 63.2 62 50.0
C09p08280 Brassica napus HOM05D000163 ORTHO05D000219 2.4e-08 63.2 46 67.4
BolC9t53738H Brassica oleracea HOM05D000163 ORTHO05D000219 2.4e-08 63.2 46 67.4
Medtr2g019440 Medicago truncatula HOM05D041408 ORTHO05D025198 2.4e-08 63.2 72 52.8
COL.COLO4_37371 Corchorus olitorius HOM05D000163 ORTHO05D000219 4.2e-08 62.4 48 62.5
Migut.F00512 Erythranthe guttata HOM05D000163 ORTHO05D000219 4.2e-08 62.4 46 56.5
Medtr4g040030 Medicago truncatula HOM05D041408 ORTHO05D000219 5.5e-08 62.0 39 79.5
Duzib205G0040 Durio zibethinus HOM05D000163 ORTHO05D000219 7.1e-08 61.6 48 56.2
Migut.F00513 Erythranthe guttata HOM05D000163 ORTHO05D000219 9.3e-08 61.2 45 57.8
THA.LOC104820162 Tarenaya hassleriana HOM05D000163 ORTHO05D000219 9.3e-08 61.2 45 62.2
TWI39G0502 Tripterygium wilfordii HOM05D000163 ORTHO05D000219 1.2e-07 60.8 47 59.6
Carub.0008s2224 Capsella rubella HOM05D000163 ORTHO05D000219 1.6e-07 60.5 46 58.7
HPP92_028252 Vanilla planifolia HOM05D000163 ORTHO05D000219 1.6e-07 60.5 45 60.0
Aa31LG11G1870 Aethionema arabicum HOM05D000163 ORTHO05D000219 2.1e-07 60.1 45 62.2
BcaC03g18082 Brassica carinata HOM05D000163 ORTHO05D000219 2.1e-07 60.1 45 62.2
C02p61540 Brassica napus HOM05D000163 ORTHO05D000219 2.1e-07 60.1 45 62.2
BolC2t12205H Brassica oleracea HOM05D000163 ORTHO05D000219 2.1e-07 60.1 45 62.2
BraA02t09102Z Brassica rapa HOM05D000163 ORTHO05D000219 2.1e-07 60.1 45 62.2
AUR62015447 Chenopodium quinoa HOM05D000163 ORTHO05D000219 2.1e-07 60.1 60 48.3
HanXRQChr14g0461231 Helianthus annuus HOM05D000163 ORTHO05D000219 2.1e-07 60.1 59 50.8
Nn6g33852 Nelumbo nucifera HOM05D000163 ORTHO05D000219 2.1e-07 60.1 46 58.7
Oeu060864.1 Olea europaea HOM05D000163 ORTHO05D000219 2.1e-07 60.1 46 58.7
PGR042G2154 Punica granatum HOM05D000163 ORTHO05D000219 2.1e-07 60.1 47 61.7
Sed0009242 Sechium edule HOM05D000163 ORTHO05D000219 2.1e-07 60.1 47 55.3
AUR62002235 Chenopodium quinoa HOM05D000163 ORTHO05D000219 2.7e-07 59.7 46 56.5
Sc07g0004820 Simmondsia chinensis HOM05D000163 ORTHO05D000219 2.7e-07 59.7 48 58.3
ATR0057G046 Amborella trichopoda HOM05D000163 ORTHO05D000219 3.5e-07 59.3 47 55.3
Thhalv10005349m.g Eutrema salsugineum HOM05D000163 ORTHO05D000219 3.5e-07 59.3 45 60.0
BcaC04g23444 Brassica carinata HOM05D000163 ORTHO05D000219 6.0e-07 58.5 45 57.8
BcaNung01429 Brassica carinata HOM05D000163 ORTHO05D000219 6.0e-07 58.5 44 56.8
BcaNung01431 Brassica carinata HOM05D000163 ORTHO05D000219 6.0e-07 58.5 44 56.8
A09p07330 Brassica napus HOM05D000163 ORTHO05D000219 6.0e-07 58.5 45 57.8
C09p08270 Brassica napus HOM05D000163 ORTHO05D000219 6.0e-07 58.5 45 57.8
BolC9t53737H Brassica oleracea HOM05D000163 ORTHO05D000219 6.0e-07 58.5 45 57.8
EL10Ac3g05870 Beta vulgaris HOM05D000163 ORTHO05D000219 7.9e-07 58.2 46 54.3
BcaNung01426 Brassica carinata HOM05D000163 ORTHO05D000219 7.9e-07 58.2 42 64.3
Lj1A976T78 Lonicera japonica HOM05D000163 ORTHO05D000219 7.9e-07 58.2 46 60.9
Lj8A45T76 Lonicera japonica HOM05D000163 ORTHO05D000219 7.9e-07 58.2 47 55.3
AUR62021125 Chenopodium quinoa HOM05D000163 ORTHO05D000219 1.0e-06 57.8 51 52.9
AUR62031419 Chenopodium quinoa HOM05D000163 ORTHO05D000219 1.0e-06 57.8 51 52.9
Manes.06G132100 Manihot esculenta HOM05D000163 ORTHO05D000219 1.0e-06 57.8 47 57.4
THA.LOC104818312 Tarenaya hassleriana HOM05D000163 ORTHO05D000219 1.3e-06 57.4 42 61.9
BraA09t36388Z Brassica rapa HOM05D000163 ORTHO05D000219 1.8e-06 57.0 46 56.5
Os06g0140800 Oryza sativa ssp. japonica HOM05D000163 ORTHO05D000219 1.8e-06 57.0 45 53.3
Sed0008681 Sechium edule HOM05D000163 ORTHO05D000219 2.3e-06 56.6 46 54.3
EL10Ac3g05425 Beta vulgaris HOM05D000163 ORTHO05D000219 3.0e-06 56.2 56 44.6
BcaC06g33159 Brassica carinata HOM05D000163 ORTHO05D000219 3.0e-06 56.2 43 58.1
A03p47130 Brassica napus HOM05D000163 ORTHO05D000219 3.0e-06 56.2 43 58.1
C07p45240 Brassica napus HOM05D000163 ORTHO05D000219 3.0e-06 56.2 43 58.1
C09p40550 Brassica napus HOM05D000163 ORTHO05D000219 3.0e-06 56.2 51 54.9
BolC7t45047H Brassica oleracea HOM05D000163 ORTHO05D000219 3.0e-06 56.2 43 58.1
BolC9t56939H Brassica oleracea HOM05D000163 ORTHO05D000219 3.0e-06 56.2 51 54.9
BraA03t13841Z Brassica rapa HOM05D000163 ORTHO05D000219 3.0e-06 56.2 43 58.1
CsaV3_5G004830 Cucumis sativus L. HOM05D000163 ORTHO05D000219 3.0e-06 56.2 46 54.3
DCAR_009453 Daucus carota HOM05D000163 ORTHO05D000219 3.0e-06 56.2 45 53.3
AL8G25540 Arabidopsis lyrata HOM05D000163 ORTHO05D000219 3.9e-06 55.8 51 52.9
BcaC04g20695 Brassica carinata HOM05D000163 ORTHO05D000219 3.9e-06 55.8 50 56.0
A02p12400 Brassica napus HOM05D000163 ORTHO05D000219 3.9e-06 55.8 51 51.0
A10p09060 Brassica napus HOM05D000163 ORTHO05D000219 3.9e-06 55.8 51 52.9
BraA02t06304Z Brassica rapa HOM05D000163 ORTHO05D000219 3.9e-06 55.8 51 51.0
BraA10t42990Z Brassica rapa HOM05D000163 ORTHO05D000219 3.9e-06 55.8 51 52.9
Sp2g24750 Schrenkiella parvula HOM05D000163 ORTHO05D000219 3.9e-06 55.8 42 59.5
EL10As2g23256 Beta vulgaris HOM05D000163 ORTHO05D000219 5.1e-06 55.5 76 39.5
BcaB05g24013 Brassica carinata HOM05D000163 ORTHO05D000219 5.1e-06 55.5 51 49.0
BcaB07g29828 Brassica carinata HOM05D000163 ORTHO05D000219 5.1e-06 55.5 41 61.0
BcaC04g20707 Brassica carinata HOM05D000163 ORTHO05D000219 5.1e-06 55.5 51 49.0
C09p40040 Brassica napus HOM05D000163 ORTHO05D000219 5.1e-06 55.5 51 49.0
BolC9t56901H Brassica oleracea HOM05D000163 ORTHO05D000219 5.1e-06 55.5 51 49.0
Sp6g13460 Schrenkiella parvula HOM05D000163 ORTHO05D000219 5.1e-06 55.5 51 51.0
Zm00001eb377470 Zea mays HOM05D000163 ORTHO05D000219 5.1e-06 55.5 55 45.5
AT5G61550 Arabidopsis thaliana HOM05D000163 ORTHO05D000219 6.7e-06 55.1 41 58.5
BcaC03g14616 Brassica carinata HOM05D000163 ORTHO05D000219 6.7e-06 55.1 51 47.1
A10p09040 Brassica napus HOM05D000163 ORTHO05D000219 6.7e-06 55.1 50 48.0
C02p20510 Brassica napus HOM05D000163 ORTHO05D000219 6.7e-06 55.1 51 47.1
C02p61550 Brassica napus HOM05D000163 ORTHO05D000219 6.7e-06 55.1 47 59.6
BolC2t08187H Brassica oleracea HOM05D000163 ORTHO05D000219 6.7e-06 55.1 51 47.1
BraA02t09103Z Brassica rapa HOM05D000163 ORTHO05D000219 6.7e-06 55.1 47 59.6
BraA10t42987Z Brassica rapa HOM05D000163 ORTHO05D000219 6.7e-06 55.1 50 48.0
CARHR275320 Cardamine hirsuta HOM05D000163 ORTHO05D000219 6.7e-06 55.1 41 61.0
Potri.004G233000 Populus trichocarpa HOM05D000163 ORTHO05D000219 8.7e-06 54.7 47 55.3


User provided reference genes

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