Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 6.1e-294 1013.4 527 100.0
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.5e-130 470.7 478 59.6
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 2.6e-119 433.3 486 57.0
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 3.5e-108 396.4 475 53.3
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 2.5e-106 390.2 424 54.7
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 3.7e-105 386.3 475 51.8
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 1.1e-104 384.8 497 50.9
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 2.0e-103 380.6 475 50.9
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 3.4e-103 379.8 486 50.2
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 4.2e-101 372.9 480 50.6
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 6.2e-97 359.0 491 47.9
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 2.6e-95 353.6 439 49.4
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 4.2e-93 346.3 472 47.5
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 2.1e-92 344.0 425 49.2
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.7e-92 343.6 443 48.8
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.7e-92 343.6 464 48.1
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.5e-92 343.2 445 48.3
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 4.6e-92 342.8 467 46.3
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 6.1e-92 342.4 461 46.6
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 7.9e-92 342.0 484 46.1
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 1.3e-91 341.3 461 47.1
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.3e-91 341.3 475 47.4
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.8e-91 340.9 467 46.0
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 2.3e-91 340.5 417 50.6
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 3.9e-91 339.7 508 45.7
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 8.7e-91 338.6 408 50.2
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 1.5e-90 337.8 463 47.3
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 1.5e-90 337.8 437 47.8
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 3.3e-90 336.7 479 47.0
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 3.3e-90 336.7 506 43.1
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 4.3e-90 336.3 471 46.5
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 4.3e-90 336.3 419 49.6
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 5.7e-90 335.9 491 46.2
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 5.7e-90 335.9 474 46.4
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 5.7e-90 335.9 472 46.6
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 5.7e-90 335.9 468 46.6
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 9.7e-90 335.1 456 47.8
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.3e-89 334.7 409 50.1
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 1.3e-89 334.7 459 47.3
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 1.6e-89 334.3 471 46.3
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 2.2e-89 334.0 410 50.0
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.1e-88 331.6 446 47.1
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 1.4e-88 331.3 401 50.6
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 2.4e-88 330.5 470 45.3
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 4.1e-88 329.7 440 47.5
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 4.1e-88 329.7 461 45.6
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 5.3e-88 329.3 478 45.6
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 9.0e-88 328.6 452 47.3
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.2e-87 328.2 463 46.9
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.2e-87 328.2 485 45.4
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 3.4e-87 326.6 462 44.8
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 3.4e-87 326.6 493 43.0
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 1.3e-86 324.7 477 44.4
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 1.3e-86 324.7 475 46.7
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.3e-86 324.7 455 46.2
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 3.8e-86 323.2 403 48.9
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 8.5e-86 322.0 419 47.7
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 8.5e-86 322.0 481 45.3
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 8.5e-86 322.0 399 48.1
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 8.5e-86 322.0 473 44.8
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.4e-85 321.2 472 45.1
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.9e-85 320.9 446 46.0
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 1.9e-85 320.9 403 49.6
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 3.2e-85 320.1 416 47.6
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 4.2e-85 319.7 487 43.9
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 5.5e-85 319.3 408 48.0
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 5.5e-85 319.3 408 48.5
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 9.4e-85 318.5 475 44.2
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 1.6e-84 317.8 460 45.4
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 6.1e-84 315.8 416 47.4
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 1.0e-83 315.1 416 46.6
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 1.0e-83 315.1 420 46.2
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 1.4e-83 314.7 420 46.4
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 2.3e-83 313.9 420 46.2
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 3.0e-83 313.5 416 47.1
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 3.9e-83 313.2 495 43.0
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 2.0e-82 310.8 467 43.7
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 3.3e-82 310.1 416 46.2
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 4.3e-82 309.7 416 45.9
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 4.3e-82 309.7 415 46.3
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 4.3e-82 309.7 434 45.2
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 7.4e-82 308.9 449 44.1
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 7.4e-82 308.9 228 72.4
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 7.4e-82 308.9 250 68.8
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 9.7e-82 308.5 403 46.2
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 2.2e-81 307.4 416 45.9
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 4.8e-81 306.2 484 42.1
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.8e-80 304.3 427 46.1
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 2.4e-80 303.9 416 46.6
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 4.1e-80 303.1 426 45.1
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 4.1e-80 303.1 406 46.3
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.2e-79 301.6 263 65.0
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 1.5e-79 301.2 531 40.1
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 3.4e-79 300.1 253 65.2
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 7.7e-79 298.9 258 65.5
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 7.7e-79 298.9 518 41.1
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 6.5e-78 295.8 238 68.5
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 1.9e-77 294.3 202 76.7
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 1.9e-77 294.3 202 76.7
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 3.2e-77 293.5 258 63.6
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 3.9e-75 286.6 450 42.2
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.1e-74 285.0 206 74.3
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 5.7e-74 282.7 240 65.8
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 6.3e-73 279.3 409 43.3
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 2.6e-71 273.9 202 70.8
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 1.2e-68 265.0 399 39.8
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 1.5e-61 241.5 401 37.9
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 8.8e-59 232.3 213 63.8
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 5.7e-58 229.6 395 37.5
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.7e-57 228.0 202 61.4
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.7e-57 228.0 188 63.3
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 1.2e-55 221.9 232 53.0
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 1.2e-55 221.9 171 71.9
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 8.5e-54 215.7 397 34.8
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 4.2e-53 213.4 219 53.0
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 5.5e-53 213.0 328 42.4
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 1.2e-52 211.8 209 55.5
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 2.7e-52 210.7 185 58.4
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.4e-48 198.4 153 66.7
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 2.1e-44 184.5 160 63.8
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 3.6e-44 183.7 191 51.8
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 4.1e-40 170.2 177 53.7
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 7.0e-32 142.9 197 43.1
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.1e-29 135.6 87 81.6
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 4.7e-28 130.2 450 27.6
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 3.3e-21 107.5 137 54.0
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 5.2e-19 100.1 124 54.0
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 5.8e-18 96.7 82 62.2
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 3.5e-15 87.4 57 80.7
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 3.9e-14 84.0 53 83.0
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 2.4e-11 74.7 83 42.2
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 1.6e-07 62.0 48 54.2
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 2.3e-06 58.2 40 60.0
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 2.3e-06 58.2 176 30.7
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 3.0e-06 57.8 41 68.3
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 3.0e-06 57.8 87 47.1
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 5.1e-06 57.0 94 36.2


User provided reference genes

Program Settings