Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 1.4e-253 879.0 422 100.0
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 5.7e-242 840.5 422 94.5
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 1.0e-238 829.7 422 92.9
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 1.4e-235 819.3 420 91.7
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 1.7e-230 802.4 422 88.9
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 3.9e-227 791.2 419 87.8
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 9.7e-226 786.6 422 86.0
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 4.8e-225 784.3 422 85.8
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 6.3e-225 783.9 419 86.4
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 1.4e-224 782.7 419 86.4
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 1.8e-224 782.3 422 85.8
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 3.1e-224 781.6 422 85.5
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 1.4e-211 739.6 416 81.0
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 2.8e-209 731.9 419 79.0
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 2.8e-209 731.9 415 79.3
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 1.1e-208 729.9 418 79.9
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 1.4e-208 729.6 415 79.0
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 4.1e-208 728.0 416 79.3
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.9e-206 721.8 416 78.6
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 3.8e-206 721.5 419 78.8
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 5.0e-206 721.1 419 78.3
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 5.0e-206 721.1 416 78.1
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 8.6e-206 720.3 415 78.6
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 1.5e-205 719.5 419 79.5
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.5e-205 719.5 416 78.6
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 1.9e-205 719.2 415 79.0
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 2.5e-205 718.8 419 77.1
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 4.2e-205 718.0 416 78.4
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 4.2e-205 718.0 419 78.8
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 7.2e-205 717.2 419 77.8
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 1.2e-204 716.5 417 77.5
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 1.2e-204 716.5 416 77.9
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 3.6e-204 714.9 416 78.8
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.6e-204 714.9 417 77.7
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 3.6e-204 714.9 416 77.9
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 6.1e-204 714.1 416 78.4
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 1.4e-203 713.0 416 77.9
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.8e-203 712.6 415 78.8
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.2e-202 709.9 417 77.7
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.5e-202 709.5 415 78.1
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 3.4e-202 708.4 417 77.2
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 4.4e-202 708.0 416 76.9
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.5e-202 707.2 415 77.8
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.7e-201 706.1 443 73.6
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 2.8e-201 705.3 419 77.3
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.8e-201 705.3 443 73.6
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 2.8e-201 705.3 422 75.6
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 8.3e-201 703.7 420 76.2
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 1.2e-199 699.9 417 74.8
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 1.2e-199 699.9 416 75.0
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 2.0e-199 699.1 416 75.5
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 2.7e-199 698.7 418 76.1
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 4.5e-199 698.0 417 75.8
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 7.8e-199 697.2 411 77.1
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 7.8e-199 697.2 422 73.5
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 1.0e-198 696.8 415 77.1
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 1.3e-198 696.4 420 75.0
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 1.7e-198 696.0 422 73.0
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 2.3e-198 695.7 415 75.2
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 2.3e-198 695.7 417 75.5
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 5.0e-198 694.5 417 75.8
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 6.6e-198 694.1 416 76.4
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 1.9e-197 692.6 423 72.6
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 1.9e-197 692.6 422 72.5
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 1.9e-197 692.6 415 75.7
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 2.5e-197 692.2 416 75.0
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 2.5e-197 692.2 422 73.0
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 4.3e-197 691.4 422 72.5
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 7.3e-197 690.6 416 74.5
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 9.5e-197 690.3 458 70.5
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 1.2e-196 689.9 421 74.8
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 2.1e-196 689.1 422 72.5
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 3.6e-196 688.3 418 75.8
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 8.0e-196 687.2 422 73.0
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 8.0e-196 687.2 422 72.5
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 3.0e-195 685.3 421 73.9
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 4.0e-195 684.9 449 70.8
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.0e-195 684.9 415 75.9
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 2.0e-194 682.6 420 73.3
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.6e-194 682.2 415 75.7
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 3.4e-194 681.8 415 75.7
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 2.2e-193 679.1 395 78.0
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 6.4e-193 677.6 425 74.4
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 1.7e-190 669.5 398 76.1
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 3.9e-190 668.3 402 77.1
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 3.3e-189 665.2 501 63.5
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 7.3e-189 664.1 417 72.9
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 1.1e-187 660.2 405 72.3
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 5.2e-187 657.9 404 72.5
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 5.2e-187 657.9 405 72.1
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 8.9e-187 657.1 430 71.2
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 3.4e-186 655.2 404 72.0
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 7.5e-186 654.1 416 71.6
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.2e-185 652.5 424 70.8
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.9e-185 652.1 423 70.7
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 3.7e-185 651.7 416 71.4
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 4.9e-185 651.4 423 69.3
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 9.2e-184 647.1 395 74.4
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 3.5e-183 645.2 422 68.0
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 3.9e-182 641.7 418 70.1
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 5.0e-182 641.3 453 66.0
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 8.6e-182 640.6 435 70.1
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 1.1e-181 640.2 410 71.2
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 5.2e-179 631.3 459 66.2
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 1.2e-178 630.2 392 73.5
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 1.3e-177 626.7 428 67.1
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 1.6e-172 609.8 419 67.3
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 6.8e-171 604.4 398 71.6
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 4.4e-170 601.7 416 68.8
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 1.0e-158 563.9 417 63.3
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 8.7e-158 560.8 419 62.1
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 9.6e-157 557.4 416 65.9
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 6.2e-156 554.7 420 61.9
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 1.4e-155 553.5 371 69.8
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 9.0e-155 550.8 358 68.4
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 1.9e-152 543.1 419 60.9
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 3.0e-150 535.8 437 60.6
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 9.6e-149 530.8 301 77.4
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 1.4e-147 526.9 415 61.9
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.3e-137 493.8 360 63.3
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 8.4e-137 491.1 421 54.6
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 4.2e-128 462.2 320 66.6
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 2.5e-125 453.0 464 52.8
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 1.7e-124 450.3 462 53.2
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 4.7e-119 432.2 473 48.4
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 1.0e-118 431.0 470 47.7
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 2.2e-108 396.7 424 47.9
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 5.4e-43 179.5 115 71.3
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 2.6e-29 134.0 123 55.3
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 3.4e-29 133.7 89 67.4
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 3.4e-29 133.7 89 67.4
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.2e-28 131.0 115 57.4
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 2.2e-28 131.0 93 65.6
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 2.9e-20 104.0 136 44.9
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 9.3e-19 99.0 69 65.2
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 2.1e-18 97.8 69 65.2
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 1.8e-17 94.7 69 63.8
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 1.9e-16 91.3 67 62.7
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.3e-16 90.5 55 74.5
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.7e-07 60.5 65 49.2
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 1.8e-06 58.2 33 72.7
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 6.9e-06 56.2 211 28.0


User provided reference genes

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