Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13048 Trifolium pratense HOM05D007780 ORTHO05D000140 6.7e-63 243.8 121 100.0
TPR.G11842 Trifolium pratense HOM05D000001 ORTHO05D000003 4.4e-46 188.0 101 95.0
Medtr3g045460 Medicago truncatula HOM05D000665 ORTHO05D000140 3.8e-42 174.9 116 81.9
Psat2g130400 Pisum sativum HOM05D000665 ORTHO05D000140 1.5e-41 172.9 106 88.7
Ca_02662_v3 Cicer arietinum L. HOM05D000665 ORTHO05D000140 1.6e-40 169.5 114 81.6
Lj6g0024114 Lotus japonicus HOM05D000665 ORTHO05D000140 4.0e-31 138.3 101 72.3
Phvul.006G016600 Phaseolus vulgaris HOM05D000665 ORTHO05D000140 5.2e-31 137.9 117 63.2
Lalb_Chr15g0080181 Lupinus albus HOM05D000665 ORTHO05D000140 1.1e-28 130.2 112 62.5
VMungo0540G2239 Vigna mungo HOM05D000665 ORTHO05D000140 1.4e-28 129.8 117 61.5
Glyma.07G234900 Glycine max HOM05D000665 ORTHO05D000140 3.2e-28 128.6 118 61.9
QL01p016365 Quercus lobata HOM05D000665 ORTHO05D000140 1.2e-22 110.2 85 61.2
Haze_23288 Corylus avellana HOM05D000665 ORTHO05D000140 1.5e-22 109.8 84 61.9
Haze_23291 Corylus avellana HOM05D000665 ORTHO05D000140 1.5e-22 109.8 84 61.9
Duzib168G0826 Durio zibethinus HOM05D000665 ORTHO05D000140 2.0e-22 109.4 91 60.4
QL01p016350 Quercus lobata HOM05D000665 ORTHO05D000140 4.4e-22 108.2 89 58.4
Thecc.09G253400 Theobroma cacao HOM05D000665 ORTHO05D000140 2.9e-21 105.5 107 53.3
Dinv29316 Davidia involucrata HOM05D000001 ORTHO05D000003 1.4e-20 103.2 84 61.9
COL.COLO4_06628 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.9e-20 102.8 91 58.2
Gohir.D05G075500 Gossypium hirsutum HOM05D000665 ORTHO05D000140 1.6e-19 99.8 92 54.3
ClCG03G012420 Citrullus lanatus HOM05D000665 ORTHO05D000140 3.0e-18 95.5 82 54.9
TAR526G0001 Trochodendron aralioides HOM05D000665 ORTHO05D000140 5.6e-17 91.3 102 46.1
Nn2g14680 Nelumbo nucifera HOM05D000665 ORTHO05D000140 2.3e-15 85.9 96 45.8
Rhsim13G0204800 Rhododendron simsii HOM05D000665 ORTHO05D000140 2.2e-13 79.3 83 45.8
Lj4C833G3 Lonicera japonica HOM05D000665 ORTHO05D000140 4.1e-12 75.1 84 45.2
Gorai.009G076900 Gossypium raimondii HOM05D000665 ORTHO05D000140 9.2e-12 73.9 92 44.6
MBI05_g30026_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 3.5e-11 72.0 87 46.0
CANSAT56G1284 Cannabis sativa HOM05D007780 ORTHO05D000140 2.3e-10 69.3 89 41.6
TAR524G0001 Trochodendron aralioides HOM05D000071 ORTHO05D000140 3.9e-10 68.6 80 41.2
Atru.chr12.1187 Acer truncatum HOM05D007780 ORTHO05D000140 5.1e-10 68.2 74 43.2
Aa31LG5G2180 Aethionema arabicum HOM05D007780 ORTHO05D000140 5.1e-10 68.2 74 44.6
EL10Ac4g08060 Beta vulgaris HOM05D009145 ORTHO05D000140 5.1e-10 68.2 80 41.2
CiPaw.14G011200 Carya illinoinensis HOM05D007780 ORTHO05D000140 5.1e-10 68.2 74 43.2
Gohir.A10G191100 Gossypium hirsutum HOM05D007780 ORTHO05D000140 5.1e-10 68.2 74 43.2
Gohir.D10G198800 Gossypium hirsutum HOM05D007780 ORTHO05D000140 5.1e-10 68.2 74 43.2
Gorai.011G222700 Gossypium raimondii HOM05D007780 ORTHO05D000140 5.1e-10 68.2 74 43.2
GSVIVG01012454001 Vitis vinifera HOM05D007780 ORTHO05D000140 5.1e-10 68.2 74 43.2
Sed0022741 Sechium edule HOM05D000665 ORTHO05D000140 6.6e-10 67.8 89 39.3
CiPaw.13G017800 Carya illinoinensis HOM05D007780 ORTHO05D000140 8.6e-10 67.4 85 41.2
Sed0003980 Sechium edule HOM05D000665 ORTHO05D000140 8.6e-10 67.4 84 41.7
vmacro12400 Vaccinium macrocarpon HOM05D000665 ORTHO05D000140 8.6e-10 67.4 89 41.6
Actinidia01695 Actinidia chinensis HOM05D007780 ORTHO05D000140 1.1e-09 67.0 74 43.2
Lj9A650T83 Lonicera japonica HOM05D007780 ORTHO05D000140 1.1e-09 67.0 81 40.7
Ciclev10001966m.g Citrus clementina HOM05D007780 ORTHO05D000140 1.5e-09 66.6 74 41.9
QL04p022093 Quercus lobata HOM05D007780 ORTHO05D000140 1.5e-09 66.6 74 43.2
THA.LOC104814049 Tarenaya hassleriana HOM05D007780 ORTHO05D000140 1.5e-09 66.6 74 43.2
CSS0047260 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 1.9e-09 66.2 74 41.9
Thhalv10028829m.g Eutrema salsugineum HOM05D007780 ORTHO05D000140 1.9e-09 66.2 74 43.2
Gohir.A05G284100 Gossypium hirsutum HOM05D007780 ORTHO05D000140 1.9e-09 66.2 74 41.9
Gohir.D05G285000 Gossypium hirsutum HOM05D007780 ORTHO05D000140 1.9e-09 66.2 74 41.9
Gorai.009G300000 Gossypium raimondii HOM05D007780 ORTHO05D000140 1.9e-09 66.2 74 41.9
Rhsim01G0122400 Rhododendron simsii HOM05D007780 ORTHO05D000140 1.9e-09 66.2 96 37.5
Sp6g02460 Schrenkiella parvula HOM05D007780 ORTHO05D000140 1.9e-09 66.2 74 43.2
Thecc.10G136600 Theobroma cacao HOM05D007780 ORTHO05D000140 1.9e-09 66.2 74 41.9
AL6G50500 Arabidopsis lyrata HOM05D007780 ORTHO05D000140 2.5e-09 65.9 74 43.2
COL.COLO4_02741 Corchorus olitorius HOM05D001221 ORTHO05D009285 2.5e-09 65.9 74 41.9
Eucgr.G03193 Eucalyptus grandis HOM05D007780 ORTHO05D000140 2.5e-09 65.9 74 41.9
Carub.0006s3459 Capsella rubella HOM05D007780 ORTHO05D000140 3.3e-09 65.5 74 41.9
Cc01_g06590 Coffea canephora HOM05D000665 ORTHO05D000140 3.3e-09 65.5 72 43.1
Sed0021640 Sechium edule HOM05D007780 ORTHO05D000140 3.3e-09 65.5 78 39.7
AT4G02550 Arabidopsis thaliana HOM05D007780 ORTHO05D000140 4.3e-09 65.1 74 43.2
CSS0019130 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 4.3e-09 65.1 96 37.5
Prupe.3G281200 Prunus persica HOM05D007780 ORTHO05D000140 4.3e-09 65.1 74 41.9
TPR.G16371 Trifolium pratense HOM05D007780 ORTHO05D000140 4.3e-09 65.1 74 41.9
vmacro20851 Vaccinium macrocarpon HOM05D007780 ORTHO05D000140 4.3e-09 65.1 74 40.5
BcaC03g16144 Brassica carinata HOM05D007780 ORTHO05D000140 5.6e-09 64.7 74 43.2
A02p24850 Brassica napus HOM05D007780 ORTHO05D000140 5.6e-09 64.7 74 41.9
C02p39310 Brassica napus HOM05D007780 ORTHO05D000140 5.6e-09 64.7 74 43.2
BolC2t09942H Brassica oleracea HOM05D007780 ORTHO05D000140 5.6e-09 64.7 74 43.2
BraA02t07471Z Brassica rapa HOM05D007780 ORTHO05D000140 5.6e-09 64.7 74 41.9
CARHR250840 Cardamine hirsuta HOM05D007780 ORTHO05D000140 5.6e-09 64.7 74 44.6
Duzib106G1157 Durio zibethinus HOM05D007780 ORTHO05D000140 5.6e-09 64.7 74 41.9
Duzib114G0835 Durio zibethinus HOM05D007780 ORTHO05D000140 5.6e-09 64.7 74 40.5
Manes.11G009500 Manihot esculenta HOM05D007780 ORTHO05D000140 5.6e-09 64.7 74 40.5
Sabra03G0140600 Salix brachista HOM05D007780 ORTHO05D000140 5.6e-09 64.7 74 40.5
Sopen01g040920 Solanum pennellii HOM05D007780 ORTHO05D000140 5.6e-09 64.7 102 36.3
Cpa.g.sc33.159 Carica papaya HOM05D007780 ORTHO05D000140 7.3e-09 64.3 74 40.5
Ca_24043_v3 Cicer arietinum L. HOM05D007780 ORTHO05D000140 7.3e-09 64.3 74 40.5
Glyma.04G127400 Glycine max HOM05D007780 ORTHO05D000140 7.3e-09 64.3 75 40.0
MD02G1272200 Malus domestica HOM05D007780 ORTHO05D000140 7.3e-09 64.3 83 38.6
Potri.003G190900 Populus trichocarpa HOM05D007780 ORTHO05D000140 7.3e-09 64.3 74 40.5
TWI34G0032 Tripterygium wilfordii HOM05D007780 ORTHO05D000140 7.3e-09 64.3 74 40.5
BcaB05g23640 Brassica carinata HOM05D007780 ORTHO05D000140 9.5e-09 63.9 74 41.9
CSS0005722 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000140 9.5e-09 63.9 88 36.4
Duzib128G2061 Durio zibethinus HOM05D007780 ORTHO05D000140 9.5e-09 63.9 74 40.5
Manes.04G154500 Manihot esculenta HOM05D007780 ORTHO05D000140 9.5e-09 63.9 74 40.5
Nn2g10625 Nelumbo nucifera HOM05D000665 ORTHO05D000140 9.5e-09 63.9 107 35.5
CSS0032239 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 1.2e-08 63.5 82 41.5
LjContig00430g0006539 Lotus japonicus HOM05D007780 ORTHO05D000140 1.2e-08 63.5 73 41.1
Medtr8g041580 Medicago truncatula HOM05D007780 ORTHO05D000140 1.2e-08 63.5 74 40.5
arahy.Tifrunner.gnm1.ann1.EN22MD Arachis hypogaea HOM05D007780 ORTHO05D000140 1.6e-08 63.2 74 39.2
Dinv31989 Davidia involucrata HOM05D007780 ORTHO05D000140 1.6e-08 63.2 88 36.4
Solyc01g097250.4 Solanum lycopersicum HOM05D007780 ORTHO05D000140 1.6e-08 63.2 102 35.3
PGSC0003DMG400019436 Solanum tuberosum HOM05D007780 ORTHO05D000140 1.6e-08 63.2 102 35.3
Haze_02962 Corylus avellana HOM05D007780 ORTHO05D000140 2.1e-08 62.8 74 39.2
Glyma.06G311800 Glycine max HOM05D007780 ORTHO05D000140 2.1e-08 62.8 74 40.5
Ah.15g097210 Amaranthus hybridus HOM05D000665 ORTHO05D000140 2.8e-08 62.4 82 36.6
arahy.Tifrunner.gnm1.ann1.23G0UH Arachis hypogaea HOM05D007780 ORTHO05D000140 2.8e-08 62.4 74 37.8
MELO3C019924.2 Cucumis melo HOM05D007780 ORTHO05D000140 2.8e-08 62.4 74 39.2
CsaV3_6G004550 Cucumis sativus L. HOM05D007780 ORTHO05D000140 2.8e-08 62.4 74 39.2
CAN.G134.88 Capsicum annuum HOM05D007780 ORTHO05D000140 3.6e-08 62.0 91 37.4
ClCG08G008560 Citrullus lanatus HOM05D007780 ORTHO05D000140 3.6e-08 62.0 74 39.2
Aqoxy7G02014 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 4.7e-08 61.6 90 35.6
vmacro07033 Vaccinium macrocarpon HOM05D000665 ORTHO05D000140 4.7e-08 61.6 80 41.2
Ah.12g055190 Amaranthus hybridus HOM05D000665 ORTHO05D000140 6.2e-08 61.2 82 35.4
Lj3g0012757 Lotus japonicus HOM05D007780 ORTHO05D000140 8.1e-08 60.8 74 40.5
PSO384G2202 Papaver somniferum HOM05D000665 ORTHO05D000140 8.1e-08 60.8 87 37.9
Nn8g40887 Nelumbo nucifera HOM05D000665 ORTHO05D000140 1.1e-07 60.5 89 34.8
Nn1g08243 Nelumbo nucifera HOM05D007780 ORTHO05D000140 1.4e-07 60.1 92 34.8
Aqoxy1G00439 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 1.8e-07 59.7 82 41.5
Aqoxy4G01122 Aquilegia oxysepala HOM05D000034 ORTHO05D000037 2.3e-07 59.3 85 37.6
CSS0020500 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 4.0e-07 58.5 72 40.3
Nn3g20636 Nelumbo nucifera HOM05D000665 ORTHO05D000140 4.0e-07 58.5 92 35.9
Nn8g39995 Nelumbo nucifera HOM05D007780 ORTHO05D000140 4.0e-07 58.5 78 35.9
AUR62027532 Chenopodium quinoa HOM05D000034 ORTHO05D000037 5.2e-07 58.2 72 34.7
Nn1g02281 Nelumbo nucifera HOM05D000665 ORTHO05D000140 5.2e-07 58.2 77 37.7
RcHm_v2.0_Chr2g0139691 Rosa chinensis HOM05D000665 ORTHO05D000140 5.2e-07 58.2 77 37.7
Nitab4.5_0004997g0030 Nicotiana tabacum HOM05D007780 ORTHO05D000140 6.8e-07 57.8 69 40.6
MELO3C015097.2 Cucumis melo HOM05D000665 ORTHO05D000140 8.9e-07 57.4 86 37.2
TAR365G0051 Trochodendron aralioides HOM05D007780 ORTHO05D000140 8.9e-07 57.4 72 38.9
EL10Ac2g04238 Beta vulgaris HOM05D009145 ORTHO05D000140 1.2e-06 57.0 72 33.3
MBI01_g28999_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.2e-06 57.0 79 44.3
Nitab4.5_0018960g0020 Nicotiana tabacum HOM05D007780 ORTHO05D000140 1.2e-06 57.0 69 40.6
PSO801G0061 Papaver somniferum HOM05D000034 ORTHO05D000037 1.2e-06 57.0 88 36.4
EL10Ac5g11631 Beta vulgaris HOM05D009145 ORTHO05D000140 1.5e-06 56.6 72 33.3
Glyma.18G141600 Glycine max HOM05D000665 ORTHO05D000140 1.5e-06 56.6 82 36.6
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.5e-06 56.6 74 33.8
PSO339G4446 Papaver somniferum HOM05D000665 ORTHO05D012445 1.5e-06 56.6 81 34.6
PSO541G0575 Papaver somniferum HOM05D000665 ORTHO05D000140 1.5e-06 56.6 76 32.9
COL.COLO4_16082 Corchorus olitorius HOM05D000665 ORTHO05D000140 2.0e-06 56.2 82 35.4
Glyma.02G156600 Glycine max HOM05D000665 ORTHO05D000140 2.0e-06 56.2 82 37.8
MBI17_g12502_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.0e-06 56.2 79 35.4
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 2.6e-06 55.8 76 36.8
CsaV3_1G043580 Cucumis sativus L. HOM05D000665 ORTHO05D000140 2.6e-06 55.8 89 34.8
MBI04_g26288_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.6e-06 55.8 74 33.8
Nn1g06485 Nelumbo nucifera HOM05D000665 ORTHO05D000140 2.6e-06 55.8 67 46.3
TAR629G1231 Trochodendron aralioides HOM05D000665 ORTHO05D000140 2.6e-06 55.8 77 37.7
MBI14_g32135_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.4e-06 55.5 75 40.0
MBI16_g05375_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.4e-06 55.5 76 39.5
MD07G1041200 Malus domestica HOM05D007780 ORTHO05D000140 3.4e-06 55.5 64 42.2
Dinv31522 Davidia involucrata HOM05D007780 ORTHO05D000140 4.4e-06 55.1 81 37.0
EL10Ac9g20779 Beta vulgaris HOM05D009145 ORTHO05D000140 5.8e-06 54.7 72 33.3
CSS0001126 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000140 5.8e-06 54.7 97 30.9
COL.COLO4_13013 Corchorus olitorius HOM05D000665 ORTHO05D000140 5.8e-06 54.7 69 36.2
MBI02_g29705_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 5.8e-06 54.7 74 32.4
MBI11_g14655_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 5.8e-06 54.7 97 34.0
MBI01_g33384_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 7.6e-06 54.3 74 32.4
Prupe.6G167700 Prunus persica HOM05D000665 ORTHO05D000140 7.6e-06 54.3 95 28.4
MBI06_g04304_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 9.9e-06 53.9 74 32.4
MBI09_g25167_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 9.9e-06 53.9 77 37.7
MBI17_g31911_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000037 9.9e-06 53.9 74 40.5


User provided reference genes

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