Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 3.8e-90 334.7 159 100.0
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 5.3e-76 287.7 157 86.6
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 2.0e-59 232.6 160 76.9
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 1.4e-44 183.3 156 59.0
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 4.1e-44 181.8 149 61.7
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.0e-43 179.5 155 59.4
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 4.7e-40 168.3 158 57.6
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 6.2e-40 167.9 157 59.2
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 9.8e-38 160.6 146 56.8
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 1.2e-32 143.7 163 50.3
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 9.2e-28 127.5 161 45.3
arahy.Tifrunner.gnm1.ann1.K9IMQL Arachis hypogaea HOM05D005317 ORTHO05D005146 6.0e-27 124.8 181 44.8
arahy.Tifrunner.gnm1.ann1.G8H34X Arachis hypogaea HOM05D005317 ORTHO05D005146 5.1e-26 121.7 201 41.3
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.3e-25 119.0 150 46.7
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 3.3e-25 119.0 152 47.4
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.1e-24 116.3 146 43.8
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 3.6e-24 115.5 147 49.7
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 8.1e-24 114.4 149 47.7
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 5.2e-23 111.7 161 44.7
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 7.6e-22 107.8 150 44.7
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 2.9e-21 105.9 150 45.3
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 3.8e-21 105.5 147 42.2
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.9e-21 105.1 151 45.7
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 4.9e-21 105.1 149 44.3
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 4.9e-21 105.1 148 43.2
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.1e-20 104.0 149 45.0
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.4e-20 103.6 151 45.0
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.4e-20 103.6 150 45.3
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.9e-20 103.2 113 53.1
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.2e-20 102.4 145 40.7
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 4.2e-20 102.1 140 45.0
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 7.1e-20 101.3 147 42.9
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 1.2e-19 100.5 146 42.5
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 4.6e-19 98.6 178 37.1
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 1.7e-18 96.7 147 38.8
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 8.7e-18 94.4 149 43.6
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.1e-17 94.0 153 39.9
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 4.3e-17 92.0 178 35.4
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 5.6e-17 91.7 153 41.8
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.3e-16 90.5 96 49.0
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 2.1e-16 89.7 153 35.9
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.8e-16 89.4 155 41.3
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 2.8e-16 89.4 152 38.2
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 3.6e-16 89.0 154 38.3
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 4.8e-16 88.6 153 39.9
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 6.2e-16 88.2 153 38.6
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 6.2e-16 88.2 151 41.7
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.1e-15 87.4 146 41.1
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 1.8e-15 86.7 154 39.6
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 1.8e-15 86.7 157 37.6
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 1.8e-15 86.7 146 40.4
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 2.4e-15 86.3 147 36.7
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 3.1e-15 85.9 148 38.5
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 4.0e-15 85.5 150 40.0
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 9.0e-15 84.3 146 35.6
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 1.2e-14 84.0 143 38.5
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.6e-14 82.8 147 40.1
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.6e-14 82.8 147 40.1
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 4.4e-14 82.0 147 41.5
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 4.4e-14 82.0 153 37.3
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 5.8e-14 81.6 100 45.0
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 9.9e-14 80.9 146 32.9
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 1.3e-13 80.5 149 37.6
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-13 80.5 147 39.5
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 2.2e-13 79.7 146 37.7
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.2e-13 79.7 150 38.7
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 2.9e-13 79.3 154 37.7
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 3.8e-13 79.0 152 38.2
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 3.8e-13 79.0 177 33.9
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 3.8e-13 79.0 147 38.8
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.8e-13 79.0 150 37.3
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 6.4e-13 78.2 146 37.0
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.4e-13 77.8 145 35.2
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.4e-13 77.8 145 35.2
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 8.4e-13 77.8 104 43.3
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.1e-12 77.4 145 35.2
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.4e-12 77.0 153 39.2
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 1.9e-12 76.6 113 44.2
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.4e-12 76.3 149 34.2
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 3.2e-12 75.9 150 36.0
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 7.1e-12 74.7 153 36.6
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 9.3e-12 74.3 149 34.9
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 9.3e-12 74.3 141 39.7
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 9.3e-12 74.3 164 32.3
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 1.2e-11 73.9 170 33.5
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.6e-11 73.6 149 34.9
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 2.1e-11 73.2 167 32.3
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.1e-11 73.2 167 32.3
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.6e-11 72.0 146 36.3
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 4.6e-11 72.0 165 31.5
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 4.6e-11 72.0 146 37.7
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 4.6e-11 72.0 142 30.3
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.9e-11 71.2 165 31.5
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.0e-10 70.9 165 30.9
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.0e-10 70.9 167 32.9
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 1.7e-10 70.1 147 35.4
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.7e-10 70.1 158 36.1
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 2.3e-10 69.7 150 36.7
Phvul.009G074000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.3e-10 69.7 137 35.8
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.0e-10 69.3 157 36.3
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 3.0e-10 69.3 151 35.1
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 3.0e-10 69.3 165 32.1
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 3.9e-10 68.9 156 33.3
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 5.1e-10 68.6 150 34.7
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 6.6e-10 68.2 150 34.0
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.7e-10 67.8 147 35.4
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.9e-09 66.6 143 37.8
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 1.9e-09 66.6 162 27.8
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 2.5e-09 66.2 150 36.0
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 3.3e-09 65.9 148 33.1
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.3e-09 65.5 153 34.6
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 4.3e-09 65.5 167 34.7
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 7.3e-09 64.7 138 35.5
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 7.3e-09 64.7 169 33.1
Sc02g0008110 Simmondsia chinensis HOM05D005317 ORTHO05D005146 9.6e-09 64.3 149 33.6
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.6e-08 63.5 80 50.0
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 1.6e-08 63.5 156 32.1
unitig_749.g13883 Utricularia gibba HOM05D005317 ORTHO05D005146 1.6e-08 63.5 126 31.7
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.1e-08 63.2 143 37.1
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.8e-08 62.8 170 31.2
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 2.8e-08 62.8 150 35.3
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 1.1e-07 60.8 145 32.4
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.4e-07 60.5 149 32.9
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 4.0e-07 58.9 104 33.7
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 6.9e-07 58.2 112 40.2
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 6.9e-07 58.2 147 32.7
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 9.0e-07 57.8 152 32.9
Gohir.D05G215433 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-06 57.0 147 30.6
Sed0025721 Sechium edule HOM05D005317 ORTHO05D005146 2.0e-06 56.6 120 35.0
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 3.4e-06 55.8 94 41.5
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.4e-06 55.8 85 44.7
FAN24G2816 Fragaria x ananassa HOM05D030376 ORTHO05D005146 4.5e-06 55.5 106 35.8
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 5.8e-06 55.1 139 33.8
HPP92_015703 Vanilla planifolia HOM05D066124 ORTHO05D051582 5.8e-06 55.1 148 32.4
Gohir.A05G212200 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.6e-06 54.7 148 32.4


User provided reference genes

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