Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13015 Trifolium pratense HOM05D002748 ORTHO05D002947 4.2e-41 171.0 92 100.0
TPR.G13078 Trifolium pratense HOM05D002748 ORTHO05D002947 5.2e-23 110.9 70 88.6
Medtr1g016390 Medicago truncatula HOM05D002748 ORTHO05D002947 1.7e-21 105.9 70 82.9
Psat6g020640 Pisum sativum HOM05D002748 ORTHO05D002947 8.3e-21 103.6 70 81.4
Ca_13169_v3 Cicer arietinum L. HOM05D002748 ORTHO05D002947 1.4e-20 102.8 70 81.4
Glyma.17G229300 Glycine max HOM05D002748 ORTHO05D002947 7.7e-19 97.1 70 74.3
Glyma.14G094100 Glycine max HOM05D002748 ORTHO05D002947 6.5e-18 94.0 70 74.3
Lj5g0005453 Lotus japonicus HOM05D002748 ORTHO05D002947 3.2e-17 91.7 70 71.4
Lalb_Chr14g0367701 Lupinus albus HOM05D002748 ORTHO05D002947 3.2e-17 91.7 68 75.0
arahy.Tifrunner.gnm1.ann1.D99VU0 Arachis hypogaea HOM05D002748 ORTHO05D002947 7.2e-17 90.5 68 72.1
arahy.Tifrunner.gnm1.ann1.YL2KIL Arachis hypogaea HOM05D002748 ORTHO05D002947 7.2e-17 90.5 68 72.1
Dinv27982 Davidia involucrata HOM05D002748 ORTHO05D002947 1.8e-15 85.9 70 65.7
Hma1.2p1_0482F.1_g162480 Hydrangea macrophylla HOM05D002748 ORTHO05D002947 4.0e-15 84.7 70 67.1
MELO3C016866.2 Cucumis melo HOM05D002748 ORTHO05D002947 5.2e-15 84.3 70 68.6
Actinidia01189 Actinidia chinensis HOM05D002748 ORTHO05D002947 6.8e-15 84.0 70 67.1
CsaV3_4G035580 Cucumis sativus L. HOM05D002748 ORTHO05D002947 6.8e-15 84.0 70 68.6
Potri.018G053900 Populus trichocarpa HOM05D002748 ORTHO05D002947 8.8e-15 83.6 70 64.3
Oeu009355.1 Olea europaea HOM05D002748 ORTHO05D002947 1.2e-14 83.2 70 65.7
Sed0022092 Sechium edule HOM05D002748 ORTHO05D002947 1.2e-14 83.2 70 65.7
vmacro00144 Vaccinium macrocarpon HOM05D002748 ORTHO05D002947 1.2e-14 83.2 70 64.3
TWI63G0782 Tripterygium wilfordii HOM05D002748 ORTHO05D002947 2.0e-14 82.4 70 60.0
GSVIVG01035411001 Vitis vinifera HOM05D002748 ORTHO05D002947 2.6e-14 82.0 70 64.3
Dinv23437 Davidia involucrata HOM05D002748 ORTHO05D002947 4.4e-14 81.3 70 62.9
Migut.E01563 Erythranthe guttata HOM05D002748 ORTHO05D002947 4.4e-14 81.3 70 58.6
Potri.006G229900 Populus trichocarpa HOM05D002748 ORTHO05D002947 5.7e-14 80.9 70 58.6
QL02p001252 Quercus lobata HOM05D002748 ORTHO05D002947 5.7e-14 80.9 70 64.3
CSS0045040 Camellia sinensis var. sinensis HOM05D002748 ORTHO05D002947 7.5e-14 80.5 70 62.9
CSS0046080 Camellia sinensis var. sinensis HOM05D002748 ORTHO05D002947 7.5e-14 80.5 70 62.9
TWI34G1737 Tripterygium wilfordii HOM05D002748 ORTHO05D002947 9.8e-14 80.1 71 57.7
Sabra18G0049200 Salix brachista HOM05D002748 ORTHO05D002947 1.3e-13 79.7 70 61.4
CSS0003664 Camellia sinensis var. sinensis HOM05D002748 ORTHO05D002947 2.2e-13 79.0 70 62.9
CSS0047040 Camellia sinensis var. sinensis HOM05D002748 ORTHO05D002947 2.2e-13 79.0 70 62.9
Haze_18195 Corylus avellana HOM05D002748 ORTHO05D002947 2.8e-13 78.6 70 60.0
Thecc.09G053400 Theobroma cacao HOM05D002748 ORTHO05D002947 2.8e-13 78.6 68 61.8
Duzib187G0341 Durio zibethinus HOM05D002748 ORTHO05D002947 3.7e-13 78.2 68 63.2
Atru.chr7.1057 Acer truncatum HOM05D002748 ORTHO05D002947 4.9e-13 77.8 70 57.1
ClCG05G017810 Citrullus lanatus HOM05D002748 ORTHO05D002947 4.9e-13 77.8 70 61.4
CAN.G1550.1 Capsicum annuum HOM05D002748 ORTHO05D002947 6.3e-13 77.4 68 60.3
CAN.G6.8 Capsicum annuum HOM05D002748 ORTHO05D002947 6.3e-13 77.4 67 61.2
Cfa017951 Carpinus fangiana HOM05D002748 ORTHO05D002947 1.1e-12 76.6 70 61.4
Duzib168G2295 Durio zibethinus HOM05D002748 ORTHO05D002947 1.1e-12 76.6 68 61.8
Sc06g0000950 Simmondsia chinensis HOM05D002748 ORTHO05D002947 1.1e-12 76.6 70 62.9
EL10Ac2g03890 Beta vulgaris HOM05D002748 ORTHO05D002947 1.4e-12 76.3 70 57.1
Gorai.001G022900 Gossypium raimondii HOM05D002748 ORTHO05D002947 1.4e-12 76.3 68 60.3
Sopen08g018890 Solanum pennellii HOM05D002748 ORTHO05D002947 1.8e-12 75.9 68 60.3
Peaxi162Scf00477g00110 Petunia axillaris HOM05D002748 ORTHO05D002947 2.4e-12 75.5 68 60.3
PGSC0003DMG400029941 Solanum tuberosum HOM05D002748 ORTHO05D002947 2.4e-12 75.5 68 60.3
CiPaw.15G039300 Carya illinoinensis HOM05D002748 ORTHO05D002947 3.1e-12 75.1 70 57.1
Nitab4.5_0003627g0030 Nicotiana tabacum HOM05D002748 ORTHO05D002947 3.1e-12 75.1 68 60.3
Solyc08g065320.3 Solanum lycopersicum HOM05D002748 ORTHO05D002947 3.1e-12 75.1 68 58.8
SalBow1G8076 Salvia bowleyana HOM05D002748 ORTHO05D002947 5.4e-12 74.3 70 55.7
MSTRG.1680 Avicennia marina HOM05D002748 ORTHO05D002947 7.0e-12 73.9 70 60.0
Sabra06G0178100 Salix brachista HOM05D002748 ORTHO05D002947 7.0e-12 73.9 70 54.3
Manes.03G047700 Manihot esculenta HOM05D002748 ORTHO05D002947 9.2e-12 73.6 68 54.4
Prupe.1G412400 Prunus persica HOM05D002748 ORTHO05D002947 9.2e-12 73.6 70 57.1
Ciclev10010166m.g Citrus clementina HOM05D002748 ORTHO05D002947 1.2e-11 73.2 70 58.6
MSTRG.14051 Avicennia marina HOM05D002748 ORTHO05D002947 1.6e-11 72.8 70 55.7
AUR62009154 Chenopodium quinoa HOM05D002748 ORTHO05D002947 1.6e-11 72.8 70 54.3
AUR62022072 Chenopodium quinoa HOM05D002748 ORTHO05D002947 1.6e-11 72.8 70 54.3
THA.LOC104803795 Tarenaya hassleriana HOM05D002748 ORTHO05D002947 1.6e-11 72.8 70 55.7
TAR626G0093 Trochodendron aralioides HOM05D002748 ORTHO05D002947 3.5e-11 71.6 70 60.0
Ah.10g034410 Amaranthus hybridus HOM05D002748 ORTHO05D002947 4.5e-11 71.2 70 54.3
Cc08_g10560 Coffea canephora HOM05D002748 ORTHO05D002947 4.5e-11 71.2 68 55.9
Lj7C272T5 Lonicera japonica HOM05D002748 ORTHO05D002947 4.5e-11 71.2 70 57.1
Lj7C276T0 Lonicera japonica HOM05D002748 ORTHO05D002947 4.5e-11 71.2 70 57.1
Phvul.001G034800 Phaseolus vulgaris HOM05D002748 ORTHO05D002947 5.9e-11 70.9 70 58.6
C08p38300 Brassica napus HOM05D002748 ORTHO05D002947 7.8e-11 70.5 68 55.9
Manes.16G080000 Manihot esculenta HOM05D002748 ORTHO05D002947 7.8e-11 70.5 70 55.7
Nitab4.5_0005860g0020 Nicotiana tabacum HOM05D002748 ORTHO05D002947 1.0e-10 70.1 68 58.8
BolC8t51406H Brassica oleracea HOM05D002748 ORTHO05D002947 1.3e-10 69.7 68 55.9
FvH4_2g31960 Fragaria vesca HOM05D002748 ORTHO05D002947 1.3e-10 69.7 70 51.4
Gohir.D07G022300 Gossypium hirsutum HOM05D002748 ORTHO05D002947 1.3e-10 69.7 60 61.7
Gohir.D08G269400 Gossypium hirsutum HOM05D002748 ORTHO05D002947 1.3e-10 69.7 68 55.9
Gorai.004G287200 Gossypium raimondii HOM05D002748 ORTHO05D002947 1.3e-10 69.7 68 55.9
Aqoxy7G01228 Aquilegia oxysepala HOM05D002748 ORTHO05D002947 1.7e-10 69.3 70 60.0
FAN15G2178 Fragaria x ananassa HOM05D002748 ORTHO05D002947 1.7e-10 69.3 70 51.4
FAN24G0223 Fragaria x ananassa HOM05D002748 ORTHO05D002947 1.7e-10 69.3 70 51.4
RcHm_v2.0_Chr6g0310861 Rosa chinensis HOM05D002748 ORTHO05D002947 1.7e-10 69.3 70 50.0
Eucgr.C03045 Eucalyptus grandis HOM05D002748 ORTHO05D002947 2.3e-10 68.9 68 51.5
FAN20G1283 Fragaria x ananassa HOM05D002748 ORTHO05D002947 2.3e-10 68.9 70 51.4
Aa31LG5G9690 Aethionema arabicum HOM05D002748 ORTHO05D002947 3.8e-10 68.2 68 52.9
BcaB08g35241 Brassica carinata HOM05D002748 ORTHO05D002947 3.8e-10 68.2 68 54.4
A09p55380 Brassica napus HOM05D002748 ORTHO05D002947 3.8e-10 68.2 68 54.4
BraA09t40940Z Brassica rapa HOM05D002748 ORTHO05D002947 3.8e-10 68.2 68 54.4
FAN27G1561 Fragaria x ananassa HOM05D002748 ORTHO05D002947 3.8e-10 68.2 70 51.4
TAR624G0198 Trochodendron aralioides HOM05D002748 ORTHO05D002947 3.8e-10 68.2 68 57.4
SHI18738 Sapria himalayana HOM05D002748 ORTHO05D002947 6.6e-10 67.4 67 55.2
Cpa.g.sc7.177 Carica papaya HOM05D002748 ORTHO05D002947 8.6e-10 67.0 70 47.1
DCAR_004429 Daucus carota HOM05D002748 ORTHO05D002947 8.6e-10 67.0 70 50.0
Gohir.A08G248400 Gossypium hirsutum HOM05D002748 ORTHO05D002947 8.6e-10 67.0 68 54.4
HanXRQChr03g0079081 Helianthus annuus HOM05D002748 ORTHO05D002947 8.6e-10 67.0 56 60.7
SGA_v2.0_scaffold163G38033 Striga asiatica HOM05D002748 ORTHO05D002947 8.6e-10 67.0 70 51.4
Thhalv10002087m.g Eutrema salsugineum HOM05D002748 ORTHO05D002947 1.5e-09 66.2 68 52.9
PSO063G0713 Papaver somniferum HOM05D002748 ORTHO05D002947 1.5e-09 66.2 70 54.3
MD15G1060400 Malus domestica HOM05D002748 ORTHO05D002947 2.5e-09 65.5 70 52.9
Nitab4.5_0002245g0130 Nicotiana tabacum HOM05D002748 ORTHO05D002947 2.5e-09 65.5 67 52.2
PSO832G3364 Papaver somniferum HOM05D002748 ORTHO05D002947 2.5e-09 65.5 70 51.4
Sp4g05950 Schrenkiella parvula HOM05D002748 ORTHO05D002947 2.5e-09 65.5 68 52.9
CAN.G1577.4 Capsicum annuum HOM05D002748 ORTHO05D002947 4.3e-09 64.7 67 53.7
PGR031G3099 Punica granatum HOM05D002748 ORTHO05D002947 4.3e-09 64.7 70 51.4
CANSAT25G2458 Cannabis sativa HOM05D002748 ORTHO05D002947 9.5e-09 63.5 70 54.3
AL4G18220 Arabidopsis lyrata HOM05D002748 ORTHO05D002947 1.2e-08 63.2 68 52.9
SGA_v2.0_scaffold169G38689 Striga asiatica HOM05D002748 ORTHO05D002947 2.1e-08 62.4 70 50.0
MD08G1061000 Malus domestica HOM05D002748 ORTHO05D002947 3.6e-08 61.6 70 50.0
AT2G26070 Arabidopsis thaliana HOM05D002748 ORTHO05D002947 8.0e-08 60.5 68 50.0
SEGI_00892 Sequoiadendron giganteum HOM05D002748 ORTHO05D002947 8.0e-08 60.5 70 47.1
VMungo0647G0609 Vigna mungo HOM05D002748 ORTHO05D002947 1.0e-07 60.1 70 48.6
Os01g0711600 Oryza sativa ssp. japonica HOM05D002748 ORTHO05D002947 1.4e-07 59.7 56 55.4
BcaC07g40835 Brassica carinata HOM05D002748 ORTHO05D002947 1.8e-07 59.3 56 58.9
Zm00001eb294260 Zea mays HOM05D002748 ORTHO05D002947 1.8e-07 59.3 55 52.7
HPP92_007632 Vanilla planifolia HOM05D002748 ORTHO05D002947 4.0e-07 58.2 68 50.0
Gohir.A07G022108 Gossypium hirsutum HOM05D002748 ORTHO05D002947 5.2e-07 57.8 53 60.4
Os05g0539800 Oryza sativa ssp. japonica HOM05D002748 ORTHO05D002947 5.2e-07 57.8 52 53.8
Hund03341 Selenicereus undatus HOM05D002748 ORTHO05D002947 6.8e-07 57.4 70 47.1
ATR0716G036 Amborella trichopoda HOM05D002748 ORTHO05D002947 1.2e-06 56.6 67 50.7
CARHR114790 Cardamine hirsuta HOM05D002748 ORTHO05D002947 2.0e-06 55.8 68 48.5
Peaxi162Scf00011g00239 Petunia axillaris HOM05D002748 ORTHO05D002947 2.6e-06 55.5 65 53.8
PGSC0003DMG400023786 Solanum tuberosum HOM05D002748 ORTHO05D002947 2.6e-06 55.5 65 47.7
Zm00001eb155080 Zea mays HOM05D002748 ORTHO05D002947 3.4e-06 55.1 54 51.9
Carub.0004s0589 Capsella rubella HOM05D002748 ORTHO05D002947 4.4e-06 54.7 68 47.1
Nn5g29143 Nelumbo nucifera HOM05D002748 ORTHO05D002947 4.4e-06 54.7 68 45.6
Zm00001eb361330 Zea mays HOM05D002748 ORTHO05D002947 7.5e-06 53.9 56 57.1


User provided reference genes

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