Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 1.4e-87 326.2 166 100.0
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 1.0e-85 320.1 165 98.2
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 1.9e-68 262.7 168 79.8
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 2.8e-67 258.8 166 78.3
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 6.2e-67 257.7 170 77.6
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 9.3e-55 217.2 170 65.9
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 7.8e-54 214.2 164 68.3
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 8.1e-51 204.1 166 63.9
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 1.1e-47 193.7 170 59.4
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 2.8e-43 179.1 172 55.8
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 1.1e-42 177.2 172 54.1
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 1.4e-42 176.8 171 55.6
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 1.4e-42 176.8 172 55.8
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 5.3e-42 174.9 169 53.8
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 9.0e-42 174.1 171 55.0
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 9.0e-42 174.1 169 56.2
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 1.2e-41 173.7 176 55.7
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 1.5e-41 173.3 175 54.9
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 2.6e-41 172.6 183 53.0
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 4.5e-41 171.8 166 56.0
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 9.9e-41 170.6 171 53.8
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 1.7e-40 169.9 174 55.7
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 2.9e-40 169.1 170 56.5
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 2.9e-40 169.1 163 54.6
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 2.9e-40 169.1 171 52.0
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 3.8e-40 168.7 170 52.9
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 3.8e-40 168.7 166 55.4
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 3.8e-40 168.7 166 55.4
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 4.9e-40 168.3 173 53.2
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 6.4e-40 167.9 169 53.8
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 8.4e-40 167.5 170 54.7
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 8.4e-40 167.5 176 50.0
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 1.4e-39 166.8 176 49.4
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 3.2e-39 165.6 173 52.6
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 4.2e-39 165.2 166 53.0
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 4.2e-39 165.2 166 53.0
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 4.2e-39 165.2 177 54.2
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 2.7e-38 162.5 174 49.4
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 4.6e-38 161.8 166 52.4
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 4.6e-38 161.8 166 52.4
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 4.6e-38 161.8 166 52.4
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 7.9e-38 161.0 166 51.8
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 1.3e-37 160.2 166 53.0
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 3.9e-37 158.7 166 51.8
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 8.7e-37 157.5 176 50.0
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 1.1e-36 157.1 176 51.1
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.5e-36 156.8 176 51.1
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 2.5e-36 156.0 171 48.0
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 2.5e-36 156.0 176 50.6
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 7.4e-36 154.5 167 50.9
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 9.6e-36 154.1 166 51.2
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 9.6e-36 154.1 171 49.1
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 1.3e-35 153.7 173 47.4
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 2.8e-35 152.5 168 47.6
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 2.8e-35 152.5 170 48.2
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 3.7e-35 152.1 175 48.0
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 4.8e-35 151.8 165 46.7
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 6.2e-35 151.4 175 45.7
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 6.2e-35 151.4 168 49.4
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 6.2e-35 151.4 159 52.2
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 8.1e-35 151.0 168 48.8
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 1.1e-34 150.6 168 48.2
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 1.8e-34 149.8 155 51.0
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 1.8e-34 149.8 155 50.3
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 3.1e-34 149.1 168 48.2
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 4.0e-34 148.7 170 48.2
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 4.0e-34 148.7 174 47.1
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 9.0e-34 147.5 169 47.3
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 1.5e-33 146.7 169 48.5
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 2.0e-33 146.4 170 47.6
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 2.0e-33 146.4 171 47.4
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 4.5e-33 145.2 174 46.6
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 8.4e-32 141.0 168 47.0
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 2.5e-31 139.4 172 43.6
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 5.5e-31 138.3 173 44.5
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 1.0e-29 134.0 164 48.2
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 1.0e-29 134.0 167 42.5
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 3.0e-29 132.5 157 45.9
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 3.9e-29 132.1 141 48.9
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 4.3e-28 128.6 168 44.6
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 4.3e-28 128.6 164 42.7
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 5.7e-28 128.3 166 42.8
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 2.6e-25 119.4 167 41.3
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 1.7e-24 116.7 127 50.4
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 1.1e-23 114.0 167 43.1
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 1.9e-23 113.2 164 41.5
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 2.5e-23 112.8 164 41.5
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 3.2e-23 112.5 138 39.1
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 4.2e-23 112.1 164 41.5
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 5.5e-23 111.7 141 44.7
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 2.1e-22 109.8 169 40.8
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 3.0e-21 105.9 146 41.1
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 9.7e-20 100.9 127 41.7
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 1.1e-18 97.4 167 36.5
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 6.1e-14 81.6 148 36.5
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 3.3e-12 75.9 103 37.9
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 5.7e-12 75.1 131 34.4
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 1.3e-11 73.9 137 32.8
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 2.2e-11 73.2 137 32.8
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 2.4e-10 69.7 180 30.0
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 7.9e-06 54.7 63 46.0


User provided reference genes

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