Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 1.5e-113 412.9 214 100.0
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 3.2e-92 342.0 218 79.8
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.0e-90 335.5 222 79.3
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 1.9e-89 332.8 216 80.6
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 3.3e-81 305.4 214 76.6
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 6.5e-77 291.2 217 70.5
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 3.0e-74 282.3 217 72.8
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 2.4e-71 272.7 241 61.4
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 5.9e-70 268.1 219 63.0
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 5.9e-70 268.1 208 65.4
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.0e-69 267.3 222 61.3
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 1.0e-69 267.3 202 66.3
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 2.9e-69 265.8 219 63.5
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 1.9e-68 263.1 200 66.0
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 2.5e-68 262.7 210 63.8
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 3.6e-67 258.8 227 59.0
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 6.1e-67 258.1 223 60.1
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 8.0e-67 257.7 224 59.8
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.4e-66 256.9 214 62.1
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 2.3e-66 256.1 221 61.1
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 2.3e-66 256.1 223 58.7
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 4.0e-66 255.4 223 59.2
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 5.2e-66 255.0 223 63.7
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 6.7e-66 254.6 238 58.0
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 8.8e-66 254.2 230 58.7
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 2.6e-65 252.7 237 61.2
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.6e-65 252.7 214 61.2
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 4.4e-65 251.9 232 58.2
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 5.7e-65 251.5 237 62.4
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 9.7e-65 250.8 223 61.0
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.7e-64 250.0 247 54.7
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.7e-64 250.0 219 59.4
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 2.8e-64 249.2 225 61.3
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 3.7e-64 248.8 237 62.0
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 3.7e-64 248.8 224 62.1
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 4.8e-64 248.4 221 57.0
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 6.3e-64 248.1 222 61.7
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 6.3e-64 248.1 227 59.5
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 8.2e-64 247.7 227 57.3
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 1.1e-63 247.3 219 58.0
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.1e-63 247.3 223 58.7
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 1.4e-63 246.9 239 59.8
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 3.1e-63 245.7 205 60.5
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 3.1e-63 245.7 230 56.5
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 2.7e-62 242.7 218 61.5
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 5.9e-62 241.5 226 56.2
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 5.9e-62 241.5 222 59.9
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 5.9e-62 241.5 220 56.4
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 7.7e-62 241.1 221 57.5
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.0e-61 240.7 214 60.3
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.0e-61 240.7 214 60.3
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 1.3e-61 240.4 216 58.8
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 2.2e-61 239.6 223 56.5
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 8.5e-61 237.7 226 58.8
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 8.5e-61 237.7 226 58.8
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.1e-60 237.3 219 60.7
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 1.5e-60 236.9 225 57.3
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.5e-60 236.9 220 56.4
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 2.5e-60 236.1 228 57.9
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.2e-60 235.7 214 59.3
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 7.2e-60 234.6 224 55.4
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 7.2e-60 234.6 233 57.1
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 1.2e-59 233.8 222 55.0
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 2.7e-59 232.6 221 58.4
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 2.7e-59 232.6 221 58.4
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 4.7e-59 231.9 240 53.8
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 4.7e-59 231.9 211 55.9
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.1e-59 231.5 209 57.4
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 6.1e-59 231.5 258 51.6
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 6.1e-59 231.5 219 58.9
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 2.3e-58 229.6 220 56.4
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 2.3e-58 229.6 218 54.1
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 4.0e-58 228.8 221 57.0
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 6.8e-58 228.0 222 57.7
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 6.8e-58 228.0 222 56.8
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 2.0e-57 226.5 222 56.3
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 7.5e-57 224.6 234 53.0
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.3e-56 223.8 229 54.1
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.3e-56 223.8 191 60.7
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 2.2e-56 223.0 221 53.8
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 4.8e-56 221.9 235 51.5
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 4.8e-56 221.9 237 51.9
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 8.3e-56 221.1 230 52.2
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 8.3e-56 221.1 202 55.9
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.4e-55 220.3 224 52.7
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 3.1e-55 219.2 232 50.9
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 5.4e-55 218.4 232 52.6
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 5.4e-55 218.4 231 51.1
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 7.0e-55 218.0 226 53.1
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.2e-54 217.2 219 52.5
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.2e-54 217.2 224 52.2
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 2.7e-54 216.1 214 56.1
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 3.5e-54 215.7 232 50.4
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 5.9e-54 214.9 223 52.9
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 1.0e-53 214.2 251 51.8
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 3.8e-53 212.2 230 50.4
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 3.8e-53 212.2 215 53.0
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 4.2e-52 208.8 164 65.9
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.1e-51 206.5 216 50.5
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 2.1e-51 206.5 368 39.1
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 6.1e-51 204.9 342 38.9
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 1.0e-50 204.1 224 50.0
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 5.2e-50 201.8 227 48.9
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 5.2e-50 201.8 279 47.0
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 1.5e-49 200.3 229 49.3
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 1.5e-49 200.3 162 66.7
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 3.4e-49 199.1 134 71.6
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 7.5e-49 198.0 166 58.4
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 2.8e-48 196.1 224 51.3
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 4.9e-48 195.3 215 54.0
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 6.3e-48 194.9 231 48.5
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 1.1e-47 194.1 226 49.1
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 1.4e-47 193.7 177 55.9
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 9.2e-47 191.0 162 62.3
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 4.5e-46 188.7 226 47.8
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 1.7e-45 186.8 179 54.2
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 5.0e-45 185.3 149 60.4
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 6.6e-45 184.9 187 54.5
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 1.5e-44 183.7 237 46.4
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 3.3e-44 182.6 205 47.8
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 7.3e-44 181.4 168 56.5
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 8.0e-43 177.9 221 44.8
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.0e-42 177.6 260 41.5
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 1.3e-40 170.6 165 57.6
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 2.9e-40 169.5 130 63.8
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.7e-37 160.2 211 45.0
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 5.6e-36 155.2 200 44.0
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.1e-35 153.3 181 52.5
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.4e-34 150.6 171 49.1
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 3.4e-33 146.0 178 45.5
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 5.8e-33 145.2 178 45.5
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 5.8e-33 145.2 178 45.5
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 1.3e-32 144.1 177 47.5
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.3e-32 144.1 211 44.1
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.2e-27 127.5 186 41.9
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.8e-26 123.6 99 61.6
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 1.2e-25 120.9 107 62.6
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 2.6e-17 93.2 183 34.4
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 6.4e-16 88.6 230 31.3
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 7.1e-15 85.1 62 67.7
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 2.1e-14 83.6 149 39.6
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 4.6e-14 82.4 90 53.3
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 6.0e-14 82.0 63 58.7
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 8.6e-13 78.2 76 48.7
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 1.2e-11 74.3 173 30.6
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 3.6e-11 72.8 168 33.9
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.1e-10 71.2 55 61.8
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.7e-08 63.9 55 61.8
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 3.8e-08 62.8 63 58.7
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 3.8e-08 62.8 180 28.9
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 3.2e-07 59.7 43 65.1
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.6e-06 57.4 79 44.3


User provided reference genes

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