Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 3.7e-96 354.8 167 100.0
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.1e-90 336.7 167 92.8
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 6.8e-90 334.0 167 92.2
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.1e-87 326.6 167 89.2
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 1.9e-84 315.8 167 84.4
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 1.8e-82 309.3 167 82.0
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 1.8e-82 309.3 167 82.0
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 2.6e-81 305.4 167 81.4
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 4.4e-81 304.7 167 80.8
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 9.9e-81 303.5 167 80.8
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 1.9e-79 299.3 167 80.2
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 9.2e-79 297.0 167 77.8
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 4.6e-78 294.7 166 75.9
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 1.7e-77 292.7 167 76.0
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 5.1e-77 291.2 167 76.6
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 6.6e-77 290.8 167 77.8
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 6.6e-77 290.8 167 79.0
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 6.6e-77 290.8 167 76.6
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 8.6e-77 290.4 167 76.0
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.1e-76 290.0 167 77.8
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.1e-76 290.0 167 77.8
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.1e-76 290.0 167 77.8
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 1.5e-76 289.7 167 75.4
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 5.6e-76 287.7 167 77.8
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 5.6e-76 287.7 167 75.4
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 5.6e-76 287.7 167 77.8
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 2.8e-75 285.4 166 77.1
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 3.6e-75 285.0 167 75.4
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 3.6e-75 285.0 167 75.4
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 4.7e-75 284.6 167 75.4
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 8.1e-75 283.9 167 75.4
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 4.0e-74 281.6 167 73.7
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.2e-73 280.0 167 74.9
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 2.6e-73 278.9 167 74.9
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 2.6e-73 278.9 167 73.7
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 5.8e-73 277.7 167 73.1
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.7e-72 276.2 164 72.0
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 1.7e-72 276.2 167 71.9
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.7e-72 276.2 167 74.3
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 2.2e-72 275.8 167 72.5
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 2.2e-72 275.8 167 72.5
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 4.9e-72 274.6 167 72.5
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 4.9e-72 274.6 167 72.5
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 6.4e-72 274.2 165 73.3
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 8.4e-72 273.9 167 74.3
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.1e-71 273.5 167 74.3
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 2.4e-71 272.3 167 72.5
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 7.1e-71 270.8 166 70.5
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.2e-70 270.0 164 70.7
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 1.2e-70 270.0 174 71.8
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 2.1e-70 269.2 167 68.3
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 4.6e-70 268.1 167 70.7
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 4.6e-70 268.1 167 70.7
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 7.8e-70 267.3 167 70.1
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 7.8e-70 267.3 167 71.3
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.7e-69 266.2 168 72.0
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 5.1e-69 264.6 165 70.9
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 1.1e-68 263.5 168 72.0
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 1.1e-68 263.5 168 71.4
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 1.1e-68 263.5 168 72.0
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 1.1e-68 263.5 168 71.4
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 1.1e-68 263.5 168 71.4
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 1.9e-68 262.7 168 71.4
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 3.3e-68 261.9 168 70.8
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 70.7
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 7.3e-68 260.8 167 70.1
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 7.3e-68 260.8 168 71.4
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 9.6e-68 260.4 168 70.8
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 2.8e-67 258.8 168 70.8
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 2.8e-67 258.8 189 64.6
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 2.8e-67 258.8 166 68.7
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 4.8e-67 258.1 164 69.5
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 6.2e-67 257.7 168 70.2
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 8.1e-67 257.3 168 69.6
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 3.1e-66 255.4 178 68.0
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 3.1e-66 255.4 167 67.7
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 3.1e-66 255.4 167 67.7
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 3.1e-66 255.4 167 67.7
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 4.0e-66 255.0 167 68.3
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.0e-65 252.7 168 70.2
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 2.6e-65 252.3 167 67.1
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 2.6e-65 252.3 167 66.5
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 4.5e-65 251.5 167 66.5
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 5.8e-65 251.1 167 64.7
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 2.2e-64 249.2 167 64.1
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 2.2e-64 249.2 219 54.3
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 4.9e-64 248.1 203 57.6
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.1e-63 246.9 168 65.5
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.9e-63 246.1 166 63.3
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.9e-63 246.1 189 61.4
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 5.4e-63 244.6 159 66.7
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.4e-63 244.6 166 62.7
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 7.1e-63 244.2 168 66.7
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 7.1e-63 244.2 166 62.7
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 2.1e-62 242.7 167 61.1
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 7.9e-62 240.7 167 64.1
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 2.3e-61 239.2 165 64.8
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 6.7e-61 237.7 134 77.6
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.5e-60 235.7 179 58.7
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 3.3e-60 235.3 167 62.3
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 1.3e-56 223.4 167 58.7
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 2.9e-56 222.2 189 53.4
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.4e-55 219.2 165 58.8
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 5.5e-55 218.0 166 59.6
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 6.7e-53 211.1 134 71.6
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.1e-52 210.3 126 73.0
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 3.3e-52 208.8 166 56.6
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 5.6e-52 208.0 166 58.4
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.6e-52 207.2 176 51.7
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 2.8e-51 205.7 131 67.9
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 4.8e-51 204.9 127 70.9
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 1.5e-49 199.9 167 52.1
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 8.4e-48 194.1 167 57.5
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 5.5e-47 191.4 176 48.3
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 3.5e-46 188.7 164 53.7
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 7.9e-46 187.6 116 72.4
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 1.0e-45 187.2 167 52.7
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 6.7e-45 184.5 166 47.6
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 1.1e-44 183.7 177 51.4
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.8e-43 179.1 122 64.8
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 4.8e-43 178.3 166 51.8
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 6.3e-43 177.9 131 64.9
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 2.4e-42 176.0 165 47.9
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.6e-41 171.0 134 56.0
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.0e-40 170.6 133 56.4
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 1.3e-40 170.2 97 74.2
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 1.3e-40 170.2 97 74.2
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 1.4e-39 166.8 167 47.9
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.6e-38 162.2 139 53.2
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.9e-38 161.0 150 52.0
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 1.0e-37 160.6 164 49.4
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.0e-37 160.6 131 54.2
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.8e-37 159.8 117 65.0
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 2.2e-35 152.9 98 65.3
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 7.7e-33 144.4 127 49.6
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 4.7e-30 135.2 183 44.3
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 8.8e-29 131.0 97 58.8
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 1.1e-28 130.6 152 47.4
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 4.1e-26 122.1 80 66.2
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 2.0e-25 119.8 112 50.9
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.7e-24 116.7 166 38.6
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 5.0e-24 115.2 165 38.2
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.2e-23 112.5 126 38.9
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 1.0e-21 107.5 101 53.5
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.7e-19 100.1 89 49.4
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 1.1e-15 87.4 167 30.5
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-13 80.5 64 54.7
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-13 80.5 64 54.7
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.3e-13 79.7 59 55.9
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.0e-13 79.3 65 53.8
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.4e-12 75.5 59 54.2
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.7e-11 73.6 64 51.6
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.7e-11 72.4 64 50.0
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 3.7e-11 72.4 112 33.9
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 6.3e-11 71.6 41 73.2
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.8e-10 70.1 61 49.2
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 1.2e-09 67.4 136 30.9
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 1.2e-09 67.4 127 30.7
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 1.6e-09 67.0 47 68.1
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 3.5e-09 65.9 166 26.5
Haze_00845 Corylus avellana HOM05D021883 ORTHO05D034098 1.3e-08 63.9 136 27.9
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 2.2e-08 63.2 39 74.4
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 5.5e-07 58.5 36 66.7
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 7.2e-07 58.2 43 58.1
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 9.4e-07 57.8 84 36.9
FAN15G3082 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.7e-06 56.2 60 36.7
Atru.chr2.3707 Acer truncatum HOM05D004267 ORTHO05D000004 4.7e-06 55.5 34 61.8


User provided reference genes

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