Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 2939.1 1472 100.0
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 2555.0 1477 86.5
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 2533.8 1478 86.6
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 2493.8 1464 85.8
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 2290.0 1476 78.7
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 2266.1 1475 78.2
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 2253.4 1478 77.3
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 2216.4 1477 77.0
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 2203.7 1477 76.6
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 2138.2 1484 74.1
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 2080.4 1482 72.7
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 2067.4 1498 71.7
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 2066.2 1495 71.4
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1771.5 1519 60.6
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1768.8 1521 60.6
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1731.5 1524 59.5
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1718.4 1518 59.6
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1703.7 1527 59.1
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1696.8 1549 58.4
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1670.2 1551 57.3
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1669.8 1471 59.7
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1661.7 1470 59.0
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1659.0 1506 58.2
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1653.6 1513 58.4
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1652.5 1536 57.4
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1643.6 1522 58.0
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1639.0 1518 58.1
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1633.2 1522 57.1
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1626.7 1524 58.3
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1625.1 1520 57.8
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1623.6 1524 57.7
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1614.7 1608 54.5
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1611.7 1487 58.8
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1602.0 1560 56.5
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1597.4 1524 56.8
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1593.2 1562 55.7
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1585.5 1524 56.6
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1565.8 1521 55.4
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1563.1 1602 53.4
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1555.0 1527 54.9
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1503.0 1506 53.9
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1494.6 1519 53.6
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1494.2 1519 54.0
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1491.9 1541 53.1
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1490.7 1513 53.7
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1489.2 1507 54.6
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1467.2 1536 52.0
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1462.6 1539 51.9
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1460.3 1416 56.1
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1458.7 1506 53.6
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1456.4 1556 52.4
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1442.2 1540 51.4
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1439.5 1507 53.0
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1439.1 1509 52.6
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1436.4 1534 51.6
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1434.5 1507 52.9
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1432.9 1515 52.2
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1431.8 1526 52.3
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1431.8 1347 57.8
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1431.4 1537 51.8
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1429.5 1503 52.6
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1429.5 1503 52.6
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1423.7 1547 51.1
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1422.9 1538 50.8
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1421.8 1522 51.9
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1419.1 1522 51.1
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1417.9 1535 50.9
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1417.1 1508 52.3
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1416.4 1519 52.1
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1412.9 1562 50.8
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1412.5 1576 50.2
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1400.6 1496 51.5
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1400.6 1509 50.9
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1397.9 1525 51.8
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1394.4 1574 50.8
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1391.3 1509 50.7
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1382.5 1488 51.9
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1381.7 1511 50.2
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1375.1 1505 51.0
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1369.8 1524 50.7
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1364.7 1501 49.8
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1360.1 1532 49.8
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1338.2 1410 51.8
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1337.8 1526 50.5
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1315.8 1308 54.7
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1307.0 1512 48.8
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1292.7 1356 52.1
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1276.5 1576 47.3
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1275.8 1360 52.5
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1221.1 1518 46.8
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1185.2 1444 47.5
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1185.2 1536 45.8
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1147.9 1121 55.1
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1095.5 1531 42.5
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 1.2e-310 1070.5 1094 53.4
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 7.2e-268 928.3 996 50.2
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 3.0e-258 896.3 1617 36.6
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 1.5e-201 708.0 901 45.6
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 5.1e-181 639.8 491 69.7
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 8.2e-179 632.5 484 68.6
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 1.3e-168 598.6 1488 30.6
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.8e-146 525.0 1030 35.7
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 8.6e-136 489.6 681 42.6
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 2.8e-110 404.8 394 55.6
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.2e-54 219.2 592 29.9
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 9.4e-50 203.8 179 55.3
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 5.9e-44 184.5 164 62.2
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 6.1e-41 174.5 107 74.8
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 3.6e-33 148.7 93 71.0
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 2.0e-23 116.3 81 74.1
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 4.1e-21 108.6 88 61.4
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 4.1e-21 108.6 88 61.4
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.9e-18 99.8 67 80.6
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 2.5e-18 99.4 89 49.4
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 4.0e-16 92.0 82 56.1
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.2e-13 82.4 80 50.0
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 2.2e-06 59.7 147 32.0


User provided reference genes

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