Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 2.3e-61 238.8 127 100.0
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 8.6e-61 236.9 127 98.4
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 4.0e-58 228.0 127 95.3
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 1.1e-55 219.9 127 90.6
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 2.4e-55 218.8 127 89.8
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 4.1e-55 218.0 127 89.0
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.2e-54 216.5 127 89.0
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 2.7e-54 215.3 127 87.4
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 89.0
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 4.6e-54 214.5 127 88.2
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 7.8e-54 213.8 127 85.8
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 1.0e-53 213.4 127 87.4
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 1.3e-53 213.0 124 90.3
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 1.3e-53 213.0 127 87.4
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 2.3e-53 212.2 127 86.6
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 3.0e-53 211.8 127 86.6
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 3.0e-53 211.8 127 87.4
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 86.6
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 86.6
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 6.6e-53 210.7 125 86.4
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 8.7e-53 210.3 127 85.0
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 1.1e-52 209.9 127 85.0
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 1.5e-52 209.5 125 86.4
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.9e-52 209.1 127 85.0
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 1.9e-52 209.1 128 86.7
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 2.5e-52 208.8 127 85.8
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.3e-52 208.4 127 83.5
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 4.3e-52 208.0 127 85.0
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 4.3e-52 208.0 127 84.3
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 5.6e-52 207.6 127 84.3
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 5.6e-52 207.6 127 85.8
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 9.6e-52 206.8 128 85.2
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 83.5
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 83.5
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 9.6e-52 206.8 126 84.9
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 1.2e-51 206.5 127 85.0
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 1.2e-51 206.5 127 84.3
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 1.6e-51 206.1 127 85.0
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 2.1e-51 205.7 127 84.3
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 2.1e-51 205.7 128 85.9
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 2.1e-51 205.7 127 84.3
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 3.6e-51 204.9 128 85.2
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.6e-51 204.9 127 81.9
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.6e-51 204.9 127 82.7
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.6e-51 204.9 127 82.7
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.7e-51 204.5 128 85.2
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 4.7e-51 204.5 129 84.5
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.2e-51 204.1 127 82.7
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 8.1e-51 203.8 128 85.2
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.1e-50 203.4 129 83.7
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.4e-50 203.0 124 85.5
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 1.4e-50 203.0 126 83.3
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.4e-50 203.0 123 86.2
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 2.4e-50 202.2 123 84.6
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 2.4e-50 202.2 127 83.5
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 4.0e-50 201.4 126 81.7
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 6.9e-50 200.7 126 81.0
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 6.9e-50 200.7 122 86.1
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 1.5e-49 199.5 129 81.4
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 2.0e-49 199.1 129 80.6
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 2.6e-49 198.7 129 82.2
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 2.6e-49 198.7 129 81.4
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 3.4e-49 198.4 129 82.2
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 4.4e-49 198.0 126 81.7
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 4.4e-49 198.0 127 78.7
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 9.9e-49 196.8 127 75.6
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.3e-48 196.4 127 79.5
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 2.9e-48 195.3 126 77.8
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 2.9e-48 195.3 127 78.7
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 3.8e-48 194.9 127 77.2
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 8.4e-48 193.7 129 79.1
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 1.4e-47 193.0 126 79.4
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 1.4e-47 193.0 127 75.6
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 3.2e-47 191.8 127 77.2
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 3.2e-47 191.8 127 78.0
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 4.2e-47 191.4 127 76.4
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 4.2e-47 191.4 127 78.0
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 5.4e-47 191.0 126 78.6
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 5.4e-47 191.0 124 77.4
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 7.1e-47 190.7 122 82.0
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 2.7e-46 188.7 127 75.6
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 2.7e-46 188.7 126 76.2
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 6.0e-46 187.6 127 74.8
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 7.8e-46 187.2 124 75.8
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 6.6e-45 184.1 126 74.6
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 1.9e-44 182.6 130 75.4
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 1.9e-44 182.6 130 75.4
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 5.6e-44 181.0 127 71.7
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 9.6e-44 180.3 129 78.3
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 1.3e-43 179.9 125 73.6
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 1.6e-43 179.5 127 71.7
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 1.8e-42 176.0 131 69.5
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.8e-42 176.0 122 72.1
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 1.8e-42 176.0 131 69.5
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 1.8e-42 176.0 118 76.3
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.4e-42 175.6 122 72.1
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 2.4e-42 175.6 118 77.1
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 3.1e-42 175.3 125 72.8
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 3.1e-42 175.3 127 74.8
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 3.1e-42 175.3 131 71.0
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 4.0e-42 174.9 130 71.5
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 4.0e-42 174.9 118 75.4
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 6.9e-42 174.1 131 68.7
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 9.0e-42 173.7 130 70.8
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 9.0e-42 173.7 131 70.2
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 1.5e-41 172.9 127 68.5
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 2.0e-41 172.6 129 75.2
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 2.0e-41 172.6 129 75.2
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 6.4e-40 167.5 127 69.3
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 7.1e-39 164.1 127 67.7
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 1.2e-38 163.3 127 66.1
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.6e-38 162.9 127 66.9
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 7.9e-38 160.6 147 59.2
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 3.0e-37 158.7 127 64.6
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.9e-36 156.0 150 60.7
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 2.1e-35 152.5 127 64.6
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.3e-32 143.3 127 59.1
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 1.7e-32 142.9 88 86.4
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 2.2e-32 142.5 127 60.6
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 4.9e-32 141.4 86 81.4
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 2.7e-30 135.6 127 57.5
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 3.9e-29 131.7 87 79.3
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 5.1e-29 131.3 87 80.5
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 2.8e-27 125.6 87 73.6
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 1.4e-26 123.2 133 53.4
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 2.1e-22 109.4 120 46.7
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 1.0e-16 90.5 121 43.0
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 1.3e-16 90.1 121 41.3
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 8.5e-16 87.4 61 73.8
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 8.8e-13 77.4 46 84.8
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 5.7e-12 74.7 40 90.0
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 7.4e-12 74.3 40 87.5
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 2.4e-10 69.3 50 74.0
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.7e-08 63.2 31 93.5
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 8.5e-08 60.8 41 70.7
Cfa022668 Carpinus fangiana HOM05D013358 ORTHO05D124219 7.9e-06 54.3 119 31.9


User provided reference genes

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