Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 8.2e-97 357.1 181 100.0
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 6.0e-92 340.9 181 95.0
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 3.6e-84 315.1 179 87.2
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 5.9e-79 297.7 151 94.7
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 3.2e-69 265.4 184 74.5
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 2.2e-62 242.7 181 69.1
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 8.8e-59 230.7 178 66.9
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 2.6e-58 229.2 182 64.8
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 3.3e-58 228.8 177 68.9
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 2.8e-57 225.7 179 66.5
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 2.8e-57 225.7 181 66.3
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 3.7e-57 225.3 180 63.9
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 1.8e-56 223.0 176 64.2
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 2.4e-56 222.6 181 66.3
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 4.1e-56 221.9 180 65.0
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 3.5e-55 218.8 182 61.5
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 4.5e-55 218.4 186 65.6
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 4.5e-55 218.4 184 64.1
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 5.9e-55 218.0 167 67.7
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 1.7e-54 216.5 177 62.1
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 2.9e-54 215.7 180 62.2
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 3.8e-54 215.3 180 61.7
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 3.8e-54 215.3 179 62.6
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 3.8e-54 215.3 179 62.6
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 6.5e-54 214.5 186 62.9
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 1.9e-53 213.0 173 64.2
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 2.1e-52 209.5 174 57.5
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 2.7e-52 209.1 180 60.6
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 1.0e-51 207.2 179 63.1
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 2.3e-51 206.1 192 59.9
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 5.2e-51 204.9 177 62.1
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 4.4e-50 201.8 178 58.4
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 1.7e-49 199.9 182 60.4
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 2.2e-49 199.5 179 58.7
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 1.4e-48 196.8 180 57.2
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 1.8e-48 196.4 178 59.0
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 1.8e-48 196.4 178 59.6
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 4.1e-48 195.3 183 56.8
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 4.1e-48 195.3 189 59.3
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 9.1e-48 194.1 175 60.6
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 1.2e-47 193.7 176 58.5
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 1.6e-47 193.4 196 58.7
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 2.0e-47 193.0 178 55.6
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 2.0e-47 193.0 184 57.6
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 5.9e-47 191.4 189 58.2
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 5.9e-47 191.4 181 56.9
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 7.7e-47 191.0 165 58.2
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 7.7e-47 191.0 183 56.3
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 1.3e-46 190.3 181 56.4
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 3.8e-46 188.7 163 57.1
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 8.6e-46 187.6 169 56.2
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 1.5e-45 186.8 175 58.9
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 1.9e-45 186.4 198 56.6
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 1.9e-45 186.4 179 55.9
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 2.5e-45 186.0 158 58.2
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 2.5e-45 186.0 175 58.9
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 1.6e-44 183.3 184 56.0
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 1.6e-44 183.3 182 58.8
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 1.8e-43 179.9 184 57.1
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 1.8e-43 179.9 168 56.5
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 2.3e-43 179.5 181 53.6
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 5.2e-43 178.3 135 63.7
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 4.4e-42 175.3 181 53.0
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 5.7e-42 174.9 174 54.0
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 7.0e-40 167.9 177 52.0
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 1.1e-37 160.6 187 46.5
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 2.8e-36 156.0 190 45.8
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 3.6e-36 155.6 190 45.3
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 3.1e-35 152.5 181 47.5
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 8.9e-35 151.0 190 44.7
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 8.9e-35 151.0 190 44.7
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 3.4e-34 149.1 185 44.3
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 4.4e-34 148.7 167 48.5
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 2.2e-33 146.4 190 43.7
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 6.4e-33 144.8 190 43.2
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 6.4e-33 144.8 190 43.2
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 6.4e-33 144.8 190 43.2
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 9.2e-32 141.0 188 43.1
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 5.0e-30 135.2 185 42.7
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 4.3e-29 132.1 119 57.1
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 4.4e-26 122.1 191 42.4
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 2.9e-25 119.4 181 45.9
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 4.6e-23 112.1 110 49.1
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 6.6e-14 81.6 169 36.7
AUR62036507 Chenopodium quinoa HOM05D000013 ORTHO05D000011 2.9e-09 66.2 63 49.2
AUR62015319 Chenopodium quinoa HOM05D000180 ORTHO05D000099 8.4e-09 64.7 96 42.7
AUR62012016 Chenopodium quinoa HOM05D000180 ORTHO05D000099 3.2e-08 62.8 110 39.1
Manes.04G164400 Manihot esculenta HOM05D000180 ORTHO05D000099 3.2e-08 62.8 99 39.4
SEGI_15552 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 3.2e-08 62.8 164 30.5
Mapoly0099s0036 Marchantia polymorpha HOM05D000180 ORTHO05D010079 4.2e-08 62.4 100 35.0
Sc13g0002480 Simmondsia chinensis HOM05D000180 ORTHO05D000099 9.3e-08 61.2 93 40.9
VMungo1383G3735 Vigna mungo HOM05D000180 ORTHO05D000099 9.3e-08 61.2 108 38.9
Haze_22988 Corylus avellana HOM05D000180 ORTHO05D000099 1.2e-07 60.8 111 37.8
Glyma.03G147800 Glycine max HOM05D000180 ORTHO05D000099 1.6e-07 60.5 110 38.2
arahy.Tifrunner.gnm1.ann1.G07C2M Arachis hypogaea HOM05D000180 ORTHO05D000099 2.1e-07 60.1 98 37.8
arahy.Tifrunner.gnm1.ann1.U3CTV6 Arachis hypogaea HOM05D000180 ORTHO05D000099 2.1e-07 60.1 98 37.8
Cc04_g12480 Coffea canephora HOM05D000180 ORTHO05D000099 2.7e-07 59.7 115 32.2
Peaxi162Scf00769g00038 Petunia axillaris HOM05D000180 ORTHO05D000099 2.7e-07 59.7 105 35.2
Rhsim07G0062500 Rhododendron simsii HOM05D000180 ORTHO05D000099 2.7e-07 59.7 129 34.9
Glyma.03G147700 Glycine max HOM05D000180 ORTHO05D000099 3.5e-07 59.3 108 38.0
Phvul.001G145600 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 3.5e-07 59.3 108 38.0
QL07p024911 Quercus lobata HOM05D000180 ORTHO05D000099 3.5e-07 59.3 112 36.6
CSS0046097 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 4.6e-07 58.9 125 35.2
Rhsim07G0062400 Rhododendron simsii HOM05D000180 ORTHO05D000099 4.6e-07 58.9 105 36.2
Nitab4.5_0006333g0020 Nicotiana tabacum HOM05D000180 ORTHO05D000099 6.0e-07 58.5 117 34.2
QL07p024903 Quercus lobata HOM05D000180 ORTHO05D000099 6.0e-07 58.5 93 41.9
RcHm_v2.0_Chr1g0319651 Rosa chinensis HOM05D000180 ORTHO05D000099 6.0e-07 58.5 154 30.5
SMO111G0080 Selaginella moellendorffii HOM05D001508 ORTHO05D001381 6.0e-07 58.5 144 30.6
Cfa005210 Carpinus fangiana HOM05D000180 ORTHO05D000099 7.8e-07 58.2 117 32.5
Cfa009618 Carpinus fangiana HOM05D000180 ORTHO05D000099 7.8e-07 58.2 100 39.0
Glyma.19G151200 Glycine max HOM05D000180 ORTHO05D000099 7.8e-07 58.2 108 37.0
ATR0664G001 Amborella trichopoda HOM05D000180 ORTHO05D000099 1.0e-06 57.8 109 33.9
CSS0008829 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 1.0e-06 57.8 105 34.3
CSS0046463 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 1.0e-06 57.8 105 34.3
Medtr7g093820 Medicago truncatula HOM05D000180 ORTHO05D000099 1.0e-06 57.8 99 37.4
Atru.chr11.2469 Acer truncatum HOM05D000180 ORTHO05D000099 1.3e-06 57.4 126 33.3
Atru.chr11.2498 Acer truncatum HOM05D000180 ORTHO05D000099 1.3e-06 57.4 126 33.3
ATR0810G102 Amborella trichopoda HOM05D000180 ORTHO05D000099 1.3e-06 57.4 104 33.7
CiPaw.05G078800 Carya illinoinensis HOM05D000180 ORTHO05D000099 1.3e-06 57.4 95 34.7
Haze_02185 Corylus avellana HOM05D000180 ORTHO05D000099 1.3e-06 57.4 116 31.9
Nitab4.5_0014533g0010 Nicotiana tabacum HOM05D000180 ORTHO05D000099 1.3e-06 57.4 107 33.6
Migut.N01311 Erythranthe guttata HOM05D000180 ORTHO05D000099 1.7e-06 57.0 123 32.5
Glyma.19G151100 Glycine max HOM05D000180 ORTHO05D000099 1.7e-06 57.0 108 36.1
Lj9C645T24 Lonicera japonica HOM05D000180 ORTHO05D000099 1.7e-06 57.0 119 32.8
PSO541G0114 Papaver somniferum HOM05D000180 ORTHO05D000099 1.7e-06 57.0 98 35.7
Ah.13g075610 Amaranthus hybridus HOM05D000180 ORTHO05D000099 2.3e-06 56.6 192 28.6
ATR0810G002 Amborella trichopoda HOM05D000180 ORTHO05D000099 2.3e-06 56.6 96 35.4
FvH4_7g02300 Fragaria vesca HOM05D000180 ORTHO05D000099 2.3e-06 56.6 154 29.9
FAN06G5112 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.3e-06 56.6 154 29.9
FAN14G0740 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.3e-06 56.6 99 34.3
Gohir.A13G012800 Gossypium hirsutum HOM05D000180 ORTHO05D000099 2.3e-06 56.6 130 31.5
Gorai.013G015000 Gossypium raimondii HOM05D000180 ORTHO05D000099 2.3e-06 56.6 99 37.4
MBI09_g32117_MAGBIO Magnolia biondii HOM05D000180 ORTHO05D000099 2.3e-06 56.6 98 36.7
MBI09_g39819_MAGBIO Magnolia biondii HOM05D000180 ORTHO05D000099 2.3e-06 56.6 98 36.7
Medtr7g093830 Medicago truncatula HOM05D000180 ORTHO05D000099 2.3e-06 56.6 99 36.4
Nitab4.5_0000321g0020 Nicotiana tabacum HOM05D000180 ORTHO05D000099 2.3e-06 56.6 107 36.4
PSO675G3710 Papaver somniferum HOM05D000180 ORTHO05D000099 2.3e-06 56.6 98 34.7
Sc13g0002470 Simmondsia chinensis HOM05D000180 ORTHO05D000099 2.3e-06 56.6 122 32.0
THA.LOC104819119 Tarenaya hassleriana HOM05D000180 ORTHO05D000099 2.3e-06 56.6 98 39.8
VMungo1080G0050 Vigna mungo HOM05D000180 ORTHO05D000099 2.3e-06 56.6 115 31.3
ATR0810G295 Amborella trichopoda HOM05D000180 ORTHO05D000099 3.0e-06 56.2 79 39.2
Glyma.11G150400 Glycine max HOM05D000180 ORTHO05D000099 3.0e-06 56.2 104 35.6
Gohir.D13G014000 Gossypium hirsutum HOM05D000180 ORTHO05D000099 3.0e-06 56.2 99 37.4
Mapoly0006s0217 Marchantia polymorpha HOM05D014630 ORTHO05D000099 3.0e-06 56.2 99 35.4
Phvul.001G145700 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 3.0e-06 56.2 101 36.6
Phvul.005G032400 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 3.0e-06 56.2 90 35.6
SEGI_27732 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 3.0e-06 56.2 85 36.5
vmacro02258 Vaccinium macrocarpon HOM05D000180 ORTHO05D000099 3.0e-06 56.2 136 30.9
ATR0243G001 Amborella trichopoda HOM05D000180 ORTHO05D000099 3.9e-06 55.8 103 35.0
ATR0810G039 Amborella trichopoda HOM05D000180 ORTHO05D000099 3.9e-06 55.8 104 33.7
Glyma.19G151300 Glycine max HOM05D000180 ORTHO05D000099 3.9e-06 55.8 180 29.4
Phvul.005G032700 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 3.9e-06 55.8 104 33.7
ATR0810G236 Amborella trichopoda HOM05D000180 ORTHO05D000099 5.1e-06 55.5 109 36.7
EL10Ac3g06867 Beta vulgaris HOM05D000180 ORTHO05D000099 5.1e-06 55.5 107 38.3
CiPaw.14G005900 Carya illinoinensis HOM05D000180 ORTHO05D000099 5.1e-06 55.5 97 36.1
CDE03G0121 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 5.1e-06 55.5 110 34.5
Eucgr.A02220 Eucalyptus grandis HOM05D000180 ORTHO05D000099 5.1e-06 55.5 84 39.3
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 5.1e-06 55.5 165 27.9
Nn7g36448 Nelumbo nucifera HOM05D000180 ORTHO05D000099 5.1e-06 55.5 123 37.4
Nitab4.5_0006639g0100 Nicotiana tabacum HOM05D000180 ORTHO05D000099 5.1e-06 55.5 107 33.6
Oeu023939.1 Olea europaea HOM05D000180 ORTHO05D000099 5.1e-06 55.5 126 31.0
Os11g0180000 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 5.1e-06 55.5 93 37.6
SEGI_25437 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 5.1e-06 55.5 147 28.6
TPR.G15112 Trifolium pratense HOM05D000180 ORTHO05D000099 5.1e-06 55.5 131 29.8
TAR381G1448 Trochodendron aralioides HOM05D000180 ORTHO05D000099 5.1e-06 55.5 76 40.8
VMungo0331G1833 Vigna mungo HOM05D000180 ORTHO05D000099 5.1e-06 55.5 125 36.8
Cc02_g29580 Coffea canephora HOM05D000180 ORTHO05D000099 6.6e-06 55.1 108 34.3
Cc02_g35990 Coffea canephora HOM05D000180 ORTHO05D000099 6.6e-06 55.1 83 38.6
HanXRQChr11g0340971 Helianthus annuus HOM05D000180 ORTHO05D000099 6.6e-06 55.1 99 39.4
Lsat_1_v5_gn_1_97880 Lactuca sativa HOM05D000180 ORTHO05D000099 6.6e-06 55.1 104 35.6
Mapoly0117s0013 Marchantia polymorpha HOM05D014630 ORTHO05D019289 6.6e-06 55.1 113 31.0
Mapoly0117s0018 Marchantia polymorpha HOM05D014630 ORTHO05D019289 6.6e-06 55.1 113 31.9
Medtr7g093850 Medicago truncatula HOM05D000180 ORTHO05D000099 6.6e-06 55.1 99 35.4
QL04p012493 Quercus lobata HOM05D000180 ORTHO05D000099 6.6e-06 55.1 98 35.7
QL04p013659 Quercus lobata HOM05D000180 ORTHO05D000099 6.6e-06 55.1 98 35.7
ATR0810G169 Amborella trichopoda HOM05D000180 ORTHO05D000099 8.7e-06 54.7 109 35.8
Ciclev10016848m.g Citrus clementina HOM05D000180 ORTHO05D000099 8.7e-06 54.7 148 29.7
Cc00_g08290 Coffea canephora HOM05D000180 ORTHO05D000099 8.7e-06 54.7 142 26.8
COL.COLO4_21756 Corchorus olitorius HOM05D001508 ORTHO05D001381 8.7e-06 54.7 114 27.2
DCAR_022776 Daucus carota HOM05D000180 ORTHO05D000099 8.7e-06 54.7 101 36.6
ECA248G2068 Erigeron canadensis HOM05D000180 ORTHO05D000099 8.7e-06 54.7 99 36.4
Lsat_1_v5_gn_2_73460 Lactuca sativa HOM05D007916 ORTHO05D010074 8.7e-06 54.7 113 32.7
Lj9C390T8 Lonicera japonica HOM05D000180 ORTHO05D000099 8.7e-06 54.7 101 36.6
Solyc10g055193.1 Solanum lycopersicum HOM05D000180 ORTHO05D000099 8.7e-06 54.7 120 30.8
TPR.G13355 Trifolium pratense HOM05D000180 ORTHO05D000099 8.7e-06 54.7 99 34.3
TPR.G20457 Trifolium pratense HOM05D000180 ORTHO05D000099 8.7e-06 54.7 93 33.3


User provided reference genes

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