Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 1.4e-105 386.3 197 100.0
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.1e-83 313.5 197 80.7
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 2.5e-83 312.4 193 82.4
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 1.6e-82 309.7 198 80.3
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 1.3e-76 290.0 197 71.1
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 2.2e-71 272.7 194 69.6
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 2.2e-71 272.7 194 69.6
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 1.0e-68 263.8 195 71.8
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 3.9e-68 261.9 196 68.4
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 7.3e-67 257.7 171 73.7
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 5.6e-59 231.5 155 73.5
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.5e-51 206.8 203 52.7
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.5e-51 206.8 203 52.7
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 1.8e-49 199.9 173 61.8
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.4e-48 195.7 189 54.5
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 4.5e-48 195.3 201 51.2
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 7.1e-46 188.0 158 60.1
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 2.3e-44 183.0 161 55.3
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.5e-43 179.5 163 55.8
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 5.7e-43 178.3 155 58.1
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.4e-41 173.7 139 59.0
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 1.8e-41 173.3 109 78.0
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 6.9e-41 171.4 186 47.3
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 1.2e-40 170.6 152 55.9
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 5.0e-39 165.2 157 53.5
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 1.2e-37 160.6 136 57.4
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 2.7e-37 159.5 153 52.3
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 1.3e-36 157.1 159 52.2
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.0e-36 156.0 157 51.0
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 5.1e-36 155.2 135 54.1
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 6.7e-36 154.8 161 49.7
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 2.5e-35 152.9 158 48.7
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 5.7e-35 151.8 158 51.9
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 1.3e-34 150.6 153 51.0
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 2.8e-34 149.4 156 48.7
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 3.7e-34 149.1 153 48.4
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 6.3e-34 148.3 135 53.3
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 8.2e-34 147.9 157 47.1
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.4e-33 147.1 160 47.5
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 1.8e-33 146.7 155 49.7
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.8e-33 146.7 141 49.6
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.8e-33 146.7 153 48.4
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.4e-33 146.4 158 46.8
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 4.1e-33 145.6 159 48.4
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 6.9e-33 144.8 172 47.1
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 6.9e-33 144.8 184 45.1
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 6.9e-33 144.8 155 49.0
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 6.9e-33 144.8 184 45.1
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 6.9e-33 144.8 156 48.1
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.2e-32 144.1 158 47.5
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 3.4e-32 142.5 149 50.3
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 5.0e-31 138.7 165 44.2
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 1.1e-30 137.5 165 43.0
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 3.2e-30 136.0 96 64.6
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 4.2e-30 135.6 159 40.9
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 3.6e-29 132.5 123 56.9
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.0e-28 131.0 139 46.0
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 8.8e-28 127.9 160 46.9
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 1.1e-27 127.5 147 42.2
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 1.1e-27 127.5 168 39.9
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 2.0e-27 126.7 148 41.2
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 2.5e-27 126.3 168 39.9
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 3.3e-27 125.9 135 46.7
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 3.3e-27 125.9 135 46.7
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 4.3e-27 125.6 135 46.7
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 4.3e-27 125.6 135 46.7
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 4.3e-27 125.6 135 46.7
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.3e-26 124.0 121 53.7
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.7e-26 123.6 157 42.0
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 2.8e-26 122.9 164 40.9
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 3.7e-26 122.5 159 40.9
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 6.3e-26 121.7 156 42.9
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 1.8e-25 120.2 163 39.9
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 2.4e-25 119.8 173 39.9
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.1e-25 119.4 129 45.7
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 3.1e-25 119.4 142 45.1
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 6.9e-25 118.2 183 38.8
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 6.9e-25 118.2 185 37.3
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 9.1e-25 117.9 191 38.2
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 1.2e-24 117.5 139 41.0
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.2e-24 117.5 153 41.2
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.0e-24 116.7 205 34.6
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.0e-24 116.7 115 48.7
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.0e-24 116.7 185 36.2
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 2.6e-24 116.3 152 37.5
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 3.4e-24 115.9 185 39.5
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 7.7e-24 114.8 191 38.2
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 7.7e-24 114.8 157 39.5
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 7.7e-24 114.8 135 40.0
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 1.3e-23 114.0 177 39.0
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.2e-23 113.2 154 37.7
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 3.8e-23 112.5 185 37.8
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 3.8e-23 112.5 185 37.8
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.8e-23 112.5 128 44.5
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 5.0e-23 112.1 144 41.7
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 6.5e-23 111.7 143 43.4
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 6.5e-23 111.7 167 34.7
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 6.5e-23 111.7 190 37.9
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.1e-22 110.9 166 38.0
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-22 110.9 161 39.8
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.1e-22 110.9 153 37.9
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 1.4e-22 110.5 153 40.5
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.4e-22 110.5 164 40.2
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.9e-22 110.2 201 36.3
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 2.5e-22 109.8 151 43.0
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 3.2e-22 109.4 167 39.5
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 5.5e-22 108.6 124 47.6
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 7.2e-22 108.2 152 40.1
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 7.2e-22 108.2 140 41.4
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 9.4e-22 107.8 193 33.2
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 9.4e-22 107.8 158 39.9
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.2e-21 107.5 166 36.7
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 1.2e-21 107.5 157 38.2
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.2e-21 107.5 147 42.9
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 1.6e-21 107.1 94 51.1
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 1.6e-21 107.1 152 38.2
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 2.1e-21 106.7 166 36.7
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 2.1e-21 106.7 193 37.8
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 2.7e-21 106.3 167 36.5
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 2.7e-21 106.3 180 33.9
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 2.7e-21 106.3 124 46.0
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 3.6e-21 105.9 182 34.1
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 3.6e-21 105.9 153 37.9
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.6e-21 105.9 158 38.0
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 4.7e-21 105.5 169 34.3
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 6.1e-21 105.1 165 37.6
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 6.1e-21 105.1 192 34.9
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 6.1e-21 105.1 151 40.4
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 7.9e-21 104.8 203 34.5
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 7.9e-21 104.8 142 39.4
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 1.0e-20 104.4 152 40.1
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 1.0e-20 104.4 150 36.7
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 1.8e-20 103.6 151 37.1
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.8e-20 103.6 155 37.4
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.8e-20 103.6 156 37.2
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 2.3e-20 103.2 157 36.9
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 3.9e-20 102.4 138 42.0
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 3.9e-20 102.4 169 36.7
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 3.9e-20 102.4 193 34.7
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 3.9e-20 102.4 158 36.7
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 5.1e-20 102.1 168 34.5
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 6.7e-20 101.7 154 36.4
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 8.8e-20 101.3 154 39.0
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 8.8e-20 101.3 154 35.1
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 1.1e-19 100.9 140 40.7
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 3.3e-19 99.4 100 46.0
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 3.3e-19 99.4 157 33.1
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 4.4e-19 99.0 169 36.1
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 4.4e-19 99.0 124 43.5
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 9.7e-19 97.8 118 42.4
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.3e-18 97.4 149 36.2
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.1e-17 94.4 171 36.3
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 3.1e-17 92.8 142 38.0
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 2.5e-14 83.2 199 30.2
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 2.1e-13 80.1 118 39.0
FAN05G2299 Fragaria x ananassa HOM05D003663 ORTHO05D005327 5.2e-12 75.5 72 55.6
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 1.5e-11 73.9 87 39.1
FAN02G2952 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.3e-10 70.9 66 56.1
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.8e-10 69.7 88 43.2
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.8e-10 68.9 57 54.4
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 2.0e-08 63.5 154 30.5
Glyma.15G116750 Glycine max HOM05D003663 ORTHO05D005327 7.2e-06 55.1 44 50.0


User provided reference genes

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