Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 1.3e-51 206.1 103 100.0
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 2.9e-46 188.3 103 89.3
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 1.5e-39 166.0 103 80.6
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 4.4e-39 164.5 103 81.6
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 4.4e-39 164.5 98 83.7
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 9.8e-39 163.3 103 79.6
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 1.3e-38 162.9 103 78.6
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 1.7e-38 162.5 103 77.7
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.1e-37 159.8 103 76.7
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 3.2e-37 158.3 99 78.8
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 3.2e-37 158.3 99 78.8
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 7.0e-37 157.1 103 75.7
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 7.0e-37 157.1 103 73.8
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 3.5e-36 154.8 102 74.5
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 4.6e-36 154.5 102 73.5
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 73.8
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 73.8
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 74.8
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 7.8e-36 153.7 102 74.5
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.0e-35 153.3 103 73.8
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 1.0e-35 153.3 103 74.8
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 3.0e-35 151.8 103 71.8
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 3.0e-35 151.8 102 72.5
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 3.0e-35 151.8 102 72.5
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 3.9e-35 151.4 103 73.8
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 5.1e-35 151.0 103 72.8
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 5.1e-35 151.0 103 70.9
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 6.6e-35 150.6 103 70.9
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.5e-34 149.4 102 71.6
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 1.5e-34 149.4 102 71.6
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 1.5e-34 149.4 97 74.2
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 1.5e-34 149.4 102 71.6
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 1.5e-34 149.4 103 70.9
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.5e-34 149.4 103 70.9
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 1.9e-34 149.1 103 68.9
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 1.9e-34 149.1 103 69.9
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.9e-34 149.1 98 74.5
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 2.5e-34 148.7 98 74.5
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 3.3e-34 148.3 103 71.8
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 3.3e-34 148.3 103 72.8
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 3.3e-34 148.3 99 70.7
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 3.3e-34 148.3 101 73.3
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 4.3e-34 147.9 102 71.6
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 4.3e-34 147.9 103 70.9
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 5.6e-34 147.5 102 70.6
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 5.6e-34 147.5 103 72.8
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 5.6e-34 147.5 98 73.5
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 5.6e-34 147.5 98 73.5
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 7.3e-34 147.1 103 70.9
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 7.3e-34 147.1 98 73.5
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 7.3e-34 147.1 98 73.5
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 9.5e-34 146.7 103 72.8
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 9.5e-34 146.7 103 72.8
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 9.5e-34 146.7 98 73.5
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 1.2e-33 146.4 100 68.0
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.2e-33 146.4 104 72.1
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 1.6e-33 146.0 103 68.9
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 1.6e-33 146.0 103 68.0
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.6e-33 146.0 98 72.4
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 2.1e-33 145.6 103 67.0
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 2.1e-33 145.6 102 67.6
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 2.8e-33 145.2 94 72.3
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 2.8e-33 145.2 103 68.9
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 3.6e-33 144.8 103 68.9
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 4.7e-33 144.4 99 71.7
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 4.7e-33 144.4 103 68.0
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 6.2e-33 144.1 103 68.0
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 6.2e-33 144.1 103 68.0
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 6.2e-33 144.1 102 69.6
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 8.1e-33 143.7 103 66.0
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.1e-32 143.3 101 65.3
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 1.4e-32 142.9 103 68.0
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 1.4e-32 142.9 103 68.0
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 1.4e-32 142.9 101 65.3
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.4e-32 142.9 101 65.3
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.4e-32 142.9 94 73.4
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 1.4e-32 142.9 103 68.0
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.8e-32 142.5 103 68.0
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 1.8e-32 142.5 103 65.0
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 1.8e-32 142.5 102 65.7
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 2.3e-32 142.1 103 67.0
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 2.3e-32 142.1 103 67.0
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 3.1e-32 141.7 103 67.0
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 3.1e-32 141.7 102 66.7
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 3.1e-32 141.7 103 67.0
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 4.0e-32 141.4 98 70.4
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 4.0e-32 141.4 101 65.3
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 4.0e-32 141.4 99 64.6
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 5.2e-32 141.0 100 68.0
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 5.2e-32 141.0 98 70.4
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 5.2e-32 141.0 104 69.2
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 5.2e-32 141.0 101 63.4
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 8.9e-32 140.2 103 68.0
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 1.2e-31 139.8 102 66.7
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.2e-31 139.8 98 71.4
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 1.2e-31 139.8 101 63.4
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 1.5e-31 139.4 103 66.0
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 2.0e-31 139.0 97 69.1
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 3.4e-31 138.3 103 63.1
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 3.4e-31 138.3 97 67.0
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 4.4e-31 137.9 97 67.0
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 7.5e-31 137.1 97 68.0
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 9.9e-31 136.7 99 66.7
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 9.9e-31 136.7 100 67.0
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 2.2e-30 135.6 99 64.6
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 2.2e-30 135.6 98 68.4
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 2.9e-30 135.2 98 67.3
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 6.4e-30 134.0 99 64.6
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 1.4e-29 132.9 99 62.6
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.9e-29 132.5 104 68.3
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 1.9e-29 132.5 102 62.7
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 2.4e-29 132.1 73 84.9
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 3.2e-29 131.7 73 83.6
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 4.1e-29 131.3 98 66.3
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 1.2e-28 129.8 100 66.0
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 2.1e-28 129.0 103 62.1
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 2.7e-28 128.6 99 65.7
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 3.5e-28 128.3 100 65.0
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 6.0e-28 127.5 100 65.0
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 1.0e-27 126.7 95 63.2
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.0e-27 126.7 98 64.3
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.0e-27 126.7 98 64.3
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 5.1e-27 124.4 100 64.0
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 5.1e-27 124.4 100 64.0
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 2.5e-26 122.1 73 76.7
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 5.8e-23 110.9 68 75.0
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.1e-21 106.7 102 58.8
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.1e-21 106.7 102 58.8
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.6e-20 102.8 88 58.0
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 2.7e-20 102.1 72 63.9
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 3.5e-20 101.7 160 38.1
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.7e-19 99.4 74 63.5
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 3.0e-19 98.6 72 62.5
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 2.5e-18 95.5 59 79.7
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 1.4e-16 89.7 85 52.9
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 6.9e-16 87.4 88 52.3
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 2.0e-15 85.9 103 49.5
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 2.0e-15 85.9 68 55.9
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.6e-15 85.5 67 55.2
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.2e-12 76.6 85 44.7
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 1.6e-12 76.3 83 47.0
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 1.1e-10 70.1 74 54.1
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 5.6e-10 67.8 98 44.9
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 5.6e-10 67.8 53 58.5
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 1.8e-08 62.8 94 43.6
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 1.5e-07 59.7 61 44.3
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 3.8e-06 55.1 93 35.5


User provided reference genes

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