Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 0.0e+00 1098.2 537 100.0
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 8.1e-310 1066.2 537 95.3
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 1.9e-306 1055.0 537 94.8
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 2.8e-302 1041.2 537 93.3
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 6.4e-291 1003.4 535 90.5
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 1.9e-290 1001.9 535 91.0
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 5.1e-288 993.8 535 88.6
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 6.7e-288 993.4 535 89.7
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 1.1e-287 992.6 535 89.9
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.9e-287 991.9 537 88.6
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 2.8e-286 988.0 535 89.0
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 5.7e-279 963.8 535 86.4
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.8e-278 961.4 539 86.6
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 2.4e-277 958.4 535 84.9
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 4.0e-277 957.6 535 85.6
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.5e-276 955.7 539 85.7
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 5.8e-276 953.7 537 84.0
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 5.8e-276 953.7 534 85.4
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 7.6e-276 953.4 535 84.7
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 2.2e-275 951.8 535 85.2
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 6.5e-275 950.3 535 85.4
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 6.5e-275 950.3 535 85.4
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 5.5e-274 947.2 535 84.9
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 1.0e-272 943.0 535 84.1
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 1.3e-272 942.6 535 83.7
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.3e-272 942.6 535 84.3
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 1.8e-272 942.2 535 83.4
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 3.0e-272 941.4 535 84.3
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 5.1e-272 940.6 535 83.7
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 1.5e-271 939.1 535 83.9
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.9e-271 938.7 535 84.1
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 3.3e-271 937.9 535 83.2
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 4.3e-271 937.6 535 83.6
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 5.7e-271 937.2 535 83.2
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 5.7e-271 937.2 535 84.1
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.3e-270 936.0 535 83.6
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.3e-270 936.0 535 83.6
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.6e-270 935.6 542 83.4
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.8e-270 934.9 535 82.6
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.8e-270 934.9 535 83.9
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.8e-270 934.9 535 83.7
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.8e-270 934.9 535 84.1
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.7e-270 934.5 535 84.1
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.1e-269 932.9 535 83.6
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 1.1e-269 932.9 536 83.8
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 1.4e-269 932.6 529 84.3
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.4e-269 932.6 535 83.2
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.1e-269 931.4 535 83.7
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 5.3e-269 930.6 535 82.8
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 5.3e-269 930.6 535 83.7
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 9.0e-269 929.9 536 84.3
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 2.0e-268 928.7 536 83.0
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 2.9e-267 924.9 535 82.4
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 3.8e-267 924.5 529 83.7
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 6.5e-267 923.7 535 83.2
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 8.5e-267 923.3 540 81.3
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 1.1e-266 922.9 529 82.2
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 5.5e-266 920.6 536 82.3
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 5.5e-266 920.6 535 81.3
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 5.5e-266 920.6 535 81.7
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.7e-265 918.3 536 81.9
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 3.6e-265 917.9 530 81.7
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 6.1e-265 917.1 536 81.0
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 1.4e-264 916.0 535 81.5
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.1e-263 912.9 535 81.7
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 4.3e-263 911.0 536 80.6
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 7.4e-263 910.2 537 81.2
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.8e-262 908.3 535 82.1
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 1.1e-261 906.4 494 89.5
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 1.8e-261 905.6 534 80.7
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 2.4e-261 905.2 529 81.5
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 3.1e-261 904.8 535 81.1
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 5.3e-261 904.0 535 80.9
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 1.2e-260 902.9 529 81.5
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 2.0e-260 902.1 536 79.7
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 3.4e-260 901.4 529 81.3
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 4.5e-260 901.0 535 80.4
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 7.7e-260 900.2 535 79.8
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 1.7e-259 899.0 535 80.4
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 2.9e-259 898.3 535 80.2
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 5.0e-259 897.5 535 80.4
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 8.5e-259 896.7 536 80.6
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 4.2e-258 894.4 535 80.0
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 4.2e-258 894.4 535 78.9
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 4.2e-258 894.4 533 79.7
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 9.4e-258 893.3 537 78.2
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 9.4e-258 893.3 533 79.4
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 1.4e-256 889.4 535 78.9
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 2.3e-256 888.6 535 80.0
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 3.0e-256 888.3 535 80.0
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 3.9e-256 887.9 536 79.5
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 3.9e-256 887.9 536 79.5
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 5.1e-256 887.5 535 79.6
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 5.1e-256 887.5 536 80.0
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 8.8e-256 886.7 536 79.7
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 3.3e-255 884.8 528 79.5
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 7.4e-255 883.6 536 79.5
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 1.3e-254 882.9 536 78.9
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 4.1e-253 877.9 536 78.4
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 1.5e-252 875.9 531 79.3
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 3.8e-251 871.3 529 78.1
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 1.9e-250 869.0 498 84.7
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 7.2e-250 867.1 530 78.5
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.2e-249 866.3 682 65.4
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 3.6e-249 864.8 550 76.4
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.8e-248 862.4 550 75.8
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 2.4e-245 852.0 535 77.6
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 2.0e-244 849.0 528 76.1
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 4.5e-244 847.8 533 77.7
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 5.0e-243 844.3 493 83.0
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 2.1e-241 839.0 528 75.8
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.0e-240 836.6 666 65.2
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 3.2e-234 815.1 539 73.1
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.8e-229 799.3 559 69.2
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 4.0e-224 781.6 530 70.6
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 2.6e-223 778.9 532 70.1
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 5.7e-223 777.7 525 69.7
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 7.5e-223 777.3 527 69.3
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 2.0e-215 752.7 535 66.2
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 3.4e-215 751.9 536 71.1
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 9.2e-213 743.8 527 66.2
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 4.7e-209 731.5 441 81.2
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 2.7e-204 715.7 528 65.2
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 6.0e-204 714.5 404 82.2
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 4.9e-198 694.9 525 63.8
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 1.3e-190 670.2 374 85.0
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 1.7e-190 669.8 497 65.0
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 9.9e-183 644.0 495 67.1
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.3e-171 607.1 422 71.6
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 1.4e-160 570.5 710 49.9
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 1.0e-134 484.6 299 76.9
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.7e-134 483.8 544 49.8
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 7.7e-127 458.4 312 72.4
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.8e-120 437.2 537 46.9
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 1.6e-103 380.9 411 49.6
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 6.6e-102 375.6 262 70.2
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 6.2e-76 289.3 184 74.5
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 7.1e-72 275.8 148 88.5
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 6.2e-60 236.1 148 75.0
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 1.1e-43 182.2 133 64.7
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 9.0e-43 179.1 166 54.2
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 1.9e-37 161.4 104 74.0
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 4.3e-37 160.2 94 78.7
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 9.7e-37 159.1 110 73.6
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 2.9e-33 147.5 88 81.8
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.4e-19 102.1 97 58.8
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 2.5e-16 91.3 46 89.1
Ca_12957_v3 Cicer arietinum L. HOM05D004282 ORTHO05D149096 3.0e-14 84.3 49 79.6
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 1.2e-13 82.4 45 84.4
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 2.0e-13 81.6 64 59.4
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 1.3e-12 79.0 44 84.1
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 1.3e-12 79.0 44 84.1
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 1.6e-10 72.0 53 66.0
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 2.7e-10 71.2 49 71.4
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 5.9e-10 70.1 48 75.0
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 5.9e-10 70.1 75 61.3
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 8.5e-09 66.2 40 77.5
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 8.5e-09 66.2 40 77.5
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 8.5e-09 66.2 40 77.5
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 2.7e-07 61.2 41 68.3
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 3.6e-07 60.8 211 25.1
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 1.0e-06 59.3 37 75.7
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 1.0e-06 59.3 37 75.7
AUR62020869 Chenopodium quinoa HOM05D003983 ORTHO05D004562 1.4e-06 58.9 211 25.1
PRCOL_00000049 Prasinoderma coloniale HOM05D003983 ORTHO05D004562 2.3e-06 58.2 201 26.4
Hund19014 Selenicereus undatus HOM05D003983 ORTHO05D004562 3.0e-06 57.8 201 24.9
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 4.0e-06 57.4 212 24.5


User provided reference genes

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