Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 1.9e-147 525.8 266 100.0
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 3.5e-112 408.7 265 80.0
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 5.9e-104 381.3 274 71.5
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 8.6e-103 377.5 262 73.3
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 1.9e-102 376.3 267 71.5
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.5e-102 375.9 260 73.8
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 2.1e-101 372.9 260 73.5
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 2.1e-101 372.9 258 73.6
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 1.0e-100 370.5 267 71.5
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 8.9e-100 367.5 258 73.3
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 4.4e-99 365.2 269 73.2
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 1.2e-88 330.5 261 66.3
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 1.0e-87 327.4 262 66.0
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 3.3e-86 322.4 222 70.7
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 5.6e-86 321.6 261 64.0
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 7.3e-86 321.2 269 62.8
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 7.3e-86 321.2 261 64.0
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 2.8e-85 319.3 254 64.6
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 3.6e-85 318.9 204 74.0
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 8.1e-85 317.8 229 67.7
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 1.1e-84 317.4 249 66.7
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 1.4e-84 317.0 208 74.5
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 4.0e-84 315.5 260 63.1
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 6.8e-84 314.7 264 62.1
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 8.9e-84 314.3 264 61.7
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 1.5e-83 313.5 271 63.1
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 2.0e-83 313.2 253 64.4
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 3.4e-83 312.4 216 68.1
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.3e-82 310.5 212 70.3
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 1.7e-82 310.1 165 87.9
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 1.7e-82 310.1 214 71.5
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 1.7e-82 310.1 265 63.4
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 2.2e-82 309.7 259 61.0
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 2.9e-82 309.3 203 71.9
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 3.7e-82 308.9 207 72.0
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 3.7e-82 308.9 212 69.8
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 3.7e-82 308.9 212 69.8
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 4.9e-82 308.5 206 72.8
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 8.3e-82 307.8 215 70.7
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.4e-81 307.0 204 71.1
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.9e-81 306.6 212 68.9
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 4.1e-81 305.4 243 65.0
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 1.6e-80 303.5 174 82.2
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 2.1e-80 303.1 245 65.7
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 4.6e-80 302.0 176 83.0
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 7.8e-80 301.2 173 81.5
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 3.9e-79 298.9 203 70.4
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 3.9e-79 298.9 260 61.9
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 5.1e-79 298.5 245 62.4
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 6.6e-79 298.1 175 78.9
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 8.6e-79 297.7 245 62.0
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 1.5e-78 297.0 203 70.0
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 1.9e-78 296.6 203 70.0
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 4.3e-78 295.4 247 61.5
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 5.6e-78 295.0 212 67.5
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 1.6e-77 293.5 243 60.1
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 2.8e-77 292.7 234 63.2
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 3.6e-77 292.4 207 69.1
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 6.2e-77 291.6 203 70.4
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 6.2e-77 291.6 202 69.3
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 6.2e-77 291.6 183 74.9
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 8.1e-77 291.2 182 74.7
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 8.1e-77 291.2 206 67.0
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 1.1e-76 290.8 178 78.1
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 1.4e-76 290.4 251 60.2
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 1.8e-76 290.0 178 77.0
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 2.4e-76 289.7 198 71.7
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 3.1e-76 289.3 207 69.1
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 3.1e-76 289.3 207 69.6
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 4.0e-76 288.9 178 77.0
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 4.0e-76 288.9 178 77.0
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 6.8e-76 288.1 235 62.6
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 1.5e-75 287.0 175 77.7
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 2.0e-75 286.6 182 74.2
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 4.4e-75 285.4 209 66.5
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 5.8e-75 285.0 207 68.1
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 9.9e-75 284.3 182 73.6
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 1.7e-74 283.5 178 73.0
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 3.8e-74 282.3 204 69.6
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 1.9e-73 280.0 199 65.3
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 2.4e-73 279.6 207 64.7
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 3.2e-73 279.3 247 60.3
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 7.1e-73 278.1 244 60.2
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 7.1e-73 278.1 292 52.7
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 2.7e-72 276.2 192 69.3
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 7.8e-72 274.6 229 61.6
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 2.3e-71 273.1 202 65.3
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 2.3e-71 273.1 236 59.3
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 3.9e-71 272.3 216 63.0
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 2.5e-70 269.6 204 65.2
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 4.3e-70 268.9 220 60.9
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 7.3e-70 268.1 159 78.6
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 9.6e-70 267.7 205 65.4
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 2.1e-69 266.5 185 67.6
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 4.0e-68 262.3 245 58.4
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 9.9e-67 257.7 146 80.8
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 4.9e-66 255.4 185 65.9
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 1.9e-65 253.4 263 53.6
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 1.3e-61 240.7 174 67.2
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 7.6e-59 231.5 257 49.8
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 2.9e-58 229.6 185 59.5
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 5.6e-54 215.3 210 50.0
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 2.4e-52 209.9 120 75.0
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 1.5e-51 207.2 225 49.8
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 8.4e-50 201.4 185 52.4
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 1.4e-49 200.7 179 53.1
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.3e-47 194.1 177 53.7
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.5e-35 154.1 95 72.6
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 7.9e-32 141.7 148 54.1
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 8.8e-31 138.3 145 55.9
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 1.3e-29 134.4 92 75.0
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.8e-29 133.3 100 71.0
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 6.3e-29 132.1 134 57.5
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 1.4e-28 131.0 92 73.9
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 1.4e-28 131.0 100 70.0
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.1e-24 117.1 146 51.4
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 3.0e-23 113.2 177 36.2
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 1.5e-22 110.9 174 36.2
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 2.0e-19 100.5 111 52.3
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 1.7e-18 97.4 72 73.6
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 3.8e-18 96.3 78 66.7
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 3.2e-17 93.2 78 62.8
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.0e-15 88.2 62 62.9
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 1.3e-10 71.2 47 74.5
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 9.4e-09 65.1 65 52.3
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.2e-08 64.7 74 48.6
Cre12.g534250 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D147105 4.4e-06 56.2 190 27.4


User provided reference genes

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