Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 6.2e-277 956.8 482 100.0
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 1.8e-236 822.4 471 86.4
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 4.4e-230 801.2 465 85.8
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 1.3e-197 693.3 456 76.1
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 5.0e-194 681.4 393 83.0
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 3.4e-182 642.1 465 70.5
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 2.3e-170 602.8 471 66.2
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 4.3e-161 572.0 458 64.0
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 1.7e-154 550.1 465 60.4
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 5.1e-154 548.5 457 61.3
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 4.3e-153 545.4 457 61.1
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 6.7e-138 495.0 355 70.7
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 1.4e-122 444.1 438 53.4
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 1.1e-121 441.0 441 52.8
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 5.7e-121 438.7 439 52.8
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 1.8e-119 433.7 446 51.6
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 3.1e-119 433.0 455 52.5
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 1.7e-117 427.2 437 50.8
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 2.9e-117 426.4 441 50.6
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 8.5e-117 424.9 444 52.0
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.5e-116 423.3 437 50.6
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.2e-116 422.9 448 49.8
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 5.5e-116 422.2 437 50.6
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 4.7e-115 419.1 439 51.5
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 7.9e-115 418.3 441 49.9
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 3.0e-114 416.4 449 50.1
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.1e-114 415.6 441 49.7
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 5.1e-114 415.6 445 50.8
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 1.5e-113 414.1 446 51.1
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 1.5e-113 414.1 442 50.7
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 4.4e-113 412.5 438 50.0
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 5.7e-113 412.1 447 49.4
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 7.4e-113 411.8 441 49.2
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 9.7e-113 411.4 441 49.9
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 2.2e-112 410.2 442 49.3
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 4.8e-112 409.1 469 47.3
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 4.1e-111 406.0 440 49.3
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 1.2e-110 404.4 426 50.5
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.5e-110 404.1 453 47.9
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 2.0e-110 403.7 461 48.2
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 1.0e-109 401.4 473 47.6
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 5.0e-109 399.1 445 48.8
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 1.5e-108 397.5 438 48.4
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 5.5e-108 395.6 457 49.2
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 2.7e-107 393.3 444 48.4
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 1.4e-106 391.0 452 44.9
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 5.2e-106 389.0 460 47.8
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 1.5e-105 387.5 442 47.1
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.0e-105 387.1 437 46.9
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 9.7e-105 384.8 437 46.5
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 1.3e-104 384.4 448 47.3
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.7e-104 384.0 453 47.5
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 3.7e-104 382.9 445 46.7
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 4.1e-103 379.4 444 46.4
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 4.1e-103 379.4 423 48.0
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 3.5e-102 376.3 453 46.4
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 2.2e-101 373.6 397 50.4
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 2.2e-101 373.6 439 46.2
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 5.0e-101 372.5 450 46.2
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 3.2e-100 369.8 467 45.0
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 1.6e-99 367.5 442 45.0
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 1.6e-99 367.5 442 45.5
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 4.0e-98 362.8 461 46.4
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 8.8e-98 361.7 447 46.1
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 1.2e-97 361.3 442 45.5
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 1.2e-97 361.3 442 45.5
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 1.5e-97 360.9 442 45.2
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 2.0e-97 360.5 386 49.0
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 3.4e-97 359.8 442 45.2
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 3.4e-97 359.8 430 47.0
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 3.4e-97 359.8 428 46.3
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 4.4e-97 359.4 442 45.5
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 4.4e-97 359.4 442 45.2
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 7.5e-97 358.6 440 46.1
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 2.8e-96 356.7 481 42.6
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.7e-96 356.3 391 48.1
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.1e-95 354.8 396 46.2
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 1.4e-95 354.4 444 45.3
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 3.1e-95 353.2 440 45.7
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 9.1e-95 351.7 438 44.3
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 1.0e-93 348.2 443 44.7
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 1.0e-93 348.2 448 45.1
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 1.0e-93 348.2 394 47.0
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 1.7e-93 347.4 455 43.7
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 1.1e-92 344.7 448 43.5
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 1.1e-92 344.7 486 41.6
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 2.5e-92 343.6 395 46.3
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 5.5e-92 342.4 442 44.3
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.8e-90 337.4 468 43.2
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 4.4e-89 332.8 396 44.4
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 7.0e-87 325.5 394 44.9
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 2.7e-86 323.6 407 43.0
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 4.5e-86 322.8 503 38.8
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 5.9e-86 322.4 460 41.7
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 2.9e-85 320.1 337 51.9
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.5e-84 317.8 394 43.4
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 2.1e-83 313.9 451 41.5
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 4.7e-83 312.8 296 54.4
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 1.0e-82 311.6 391 44.0
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 1.8e-82 310.8 403 41.2
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 2.0e-81 307.4 392 43.4
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 2.0e-81 307.4 392 43.1
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 1.4e-79 301.2 391 42.5
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 1.6e-78 297.7 329 48.3
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 8.6e-77 292.0 442 41.9
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 1.8e-74 284.3 423 39.7
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 2.3e-74 283.9 415 39.5
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 6.8e-74 282.3 386 42.7
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.7e-72 277.7 441 40.4
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.7e-72 277.7 441 40.1
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 6.4e-72 275.8 362 41.7
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 1.6e-70 271.2 438 37.9
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 2.8e-67 260.4 458 37.1
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.7e-67 259.6 451 37.0
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.0e-66 256.5 354 39.8
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 5.2e-66 256.1 459 35.1
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 6.4e-64 249.2 417 38.8
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 1.9e-63 247.7 392 39.5
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 4.1e-63 246.5 391 38.4
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.4e-55 221.5 441 34.0
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 3.1e-50 203.8 281 41.6
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 3.4e-49 200.3 401 32.2
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 6.4e-48 196.1 288 37.8
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 2.3e-37 161.0 299 35.5
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 4.5e-17 93.6 147 37.4
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 6.7e-13 79.7 138 36.2
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 1.6e-11 75.1 55 70.9
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.6e-11 75.1 89 44.9
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 2.9e-08 64.3 51 68.6
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 7.2e-07 59.7 52 65.4


User provided reference genes

Program Settings