Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 1.9e-192 675.6 327 100.0
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 1.3e-164 583.2 331 86.7
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 5.0e-161 571.2 330 86.4
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 3.8e-137 491.9 372 68.3
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 1.1e-136 490.3 370 68.1
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 3.2e-136 488.8 304 80.9
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 1.6e-135 486.5 370 68.9
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 2.2e-132 476.1 366 68.0
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 3.7e-132 475.3 363 67.5
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 1.9e-128 463.0 367 68.4
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 4.2e-128 461.8 366 66.7
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 1.5e-125 453.4 367 64.9
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 4.4e-125 451.8 365 64.9
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 9.8e-125 450.7 370 64.3
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 7.0e-115 417.9 306 67.3
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 3.5e-114 415.6 306 66.7
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 3.0e-113 412.5 320 66.2
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 3.0e-113 412.5 307 66.4
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 8.3e-108 394.4 308 65.6
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 1.9e-104 383.3 305 65.6
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 1.9e-104 383.3 314 66.2
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 2.5e-104 382.9 298 66.4
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.8e-102 376.7 267 69.7
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.8e-102 376.7 212 81.6
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.3e-102 376.3 212 81.1
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 4.0e-102 375.6 237 75.1
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 5.2e-102 375.2 231 77.5
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 5.2e-102 375.2 241 75.1
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 1.2e-101 374.0 267 69.3
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 2.0e-101 373.2 269 68.8
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 3.4e-101 372.5 286 65.7
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 1.7e-100 370.2 242 74.0
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 1.7e-100 370.2 213 79.3
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 2.2e-100 369.8 241 73.9
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 4.9e-100 368.6 215 81.4
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 6.4e-100 368.2 226 77.9
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 1.4e-99 367.1 244 71.7
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 1.9e-99 366.7 229 76.0
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 2.4e-99 366.3 270 67.4
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 3.2e-99 365.9 250 70.8
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 5.4e-99 365.2 219 78.5
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 5.4e-99 365.2 213 79.3
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 9.2e-99 364.4 247 71.7
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 3.5e-98 362.5 203 82.8
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 4.6e-98 362.1 272 66.5
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 7.8e-98 361.3 251 70.1
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 7.8e-98 361.3 247 71.7
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 1.0e-97 360.9 213 79.8
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 1.3e-97 360.5 213 79.3
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 1.7e-97 360.1 210 78.6
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 1.7e-97 360.1 247 70.9
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 3.0e-97 359.4 225 74.7
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 5.1e-97 358.6 281 64.1
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 5.1e-97 358.6 230 73.5
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 5.1e-97 358.6 322 59.0
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 6.6e-97 358.2 267 67.4
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 8.6e-97 357.8 204 80.9
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 1.5e-96 357.1 264 66.7
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 1.5e-96 357.1 206 80.1
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.5e-96 357.1 206 80.1
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.5e-96 357.1 206 80.1
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 3.3e-96 355.9 237 72.2
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.3e-96 355.9 206 80.1
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 4.3e-96 355.5 222 73.0
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.2e-95 354.0 215 75.8
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 1.6e-95 353.6 257 67.7
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 2.8e-95 352.8 284 62.0
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 2.8e-95 352.8 246 67.5
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 2.8e-95 352.8 205 81.0
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 3.6e-95 352.4 201 80.6
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 6.2e-95 351.7 211 76.3
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 8.1e-95 351.3 203 78.8
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 8.1e-95 351.3 226 73.5
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.1e-94 350.9 215 75.3
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 1.8e-94 350.1 287 62.4
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 2.4e-94 349.7 206 76.7
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 2.4e-94 349.7 207 76.8
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 2.4e-94 349.7 206 76.7
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 2.4e-94 349.7 207 76.8
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 2.4e-94 349.7 206 76.7
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.4e-94 349.7 216 75.5
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.4e-94 349.7 268 63.8
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 3.1e-94 349.4 229 72.9
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 3.1e-94 349.4 206 76.7
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 4.0e-94 349.0 253 66.4
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 5.2e-94 348.6 273 63.4
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 6.8e-94 348.2 249 66.7
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 6.8e-94 348.2 247 66.4
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 6.8e-94 348.2 210 77.6
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 6.8e-94 348.2 293 59.0
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 6.8e-94 348.2 268 63.4
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 8.9e-94 347.8 206 77.2
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 1.2e-93 347.4 235 70.2
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 1.2e-93 347.4 235 70.2
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 5.8e-93 345.1 205 78.5
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 9.9e-93 344.4 284 62.0
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 1.3e-92 344.0 207 75.4
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 1.7e-92 343.6 329 54.4
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 2.2e-92 343.2 213 74.6
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 2.9e-92 342.8 195 80.0
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 8.4e-92 341.3 223 73.5
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 1.9e-91 340.1 247 68.0
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.2e-91 339.3 233 70.0
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 7.8e-90 334.7 225 71.6
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 1.7e-89 333.6 242 66.9
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 1.9e-88 330.1 242 66.5
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 3.1e-86 322.8 207 71.0
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 6.9e-86 321.6 230 64.3
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 6.9e-86 321.6 274 58.8
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 9.0e-86 321.2 221 69.2
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.2e-85 320.9 221 69.2
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.7e-84 317.0 204 71.6
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 2.9e-84 316.2 210 69.0
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 4.2e-83 312.4 230 64.3
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 2.7e-82 309.7 255 62.0
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 5.1e-81 305.4 222 65.8
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 4.3e-80 302.4 231 64.9
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.8e-73 280.4 161 78.9
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 3.9e-73 279.3 162 75.9
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.3e-71 274.2 207 58.9
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 8.1e-71 271.6 201 59.2
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 1.8e-70 270.4 207 68.6
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 7.6e-69 265.0 204 59.8
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.0e-68 264.6 161 73.9
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 1.4e-67 260.8 145 82.8
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 9.3e-67 258.1 147 82.3
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 5.1e-65 252.3 150 76.7
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 3.7e-63 246.1 226 57.5
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 6.7e-57 225.3 209 51.7
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 5.1e-49 199.1 121 73.6
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 3.4e-45 186.4 221 43.9
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 2.2e-44 183.7 152 60.5
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 2.7e-42 176.8 147 67.3
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 2.3e-41 173.7 156 54.5
TPR.G14067 Trifolium pratense HOM05D005195 ORTHO05D006088 1.1e-38 164.9 89 89.9
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 5.3e-30 136.0 116 53.4
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.3e-23 114.8 83 59.0
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 1.3e-20 104.8 95 60.0
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 8.5e-20 102.1 75 68.0
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 4.7e-18 96.3 124 50.0
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 2.0e-16 90.9 79 59.5
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 6.3e-15 85.9 52 76.9
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 8.3e-15 85.5 66 63.6
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 1.9e-11 74.3 72 52.8
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 2.4e-06 57.4 51 52.9
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 7.0e-06 55.8 107 34.6


User provided reference genes

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