Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 3.4e-203 711.4 363 100.0
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 3.9e-175 618.2 359 88.0
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.4e-172 609.8 355 87.6
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 2.4e-140 502.7 299 87.6
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 1.4e-116 423.7 363 61.7
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 6.4e-109 398.3 359 57.4
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.1e-105 387.5 361 54.8
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 9.6e-105 384.4 363 57.6
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 4.7e-104 382.1 361 57.9
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 8.1e-104 381.3 364 56.6
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 1.1e-103 380.9 353 56.7
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 1.8e-103 380.2 326 59.2
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 5.2e-103 378.6 360 56.9
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 1.2e-102 377.5 361 57.1
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 2.0e-102 376.7 348 58.0
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.1e-100 370.9 360 53.9
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 1.1e-100 370.9 358 55.3
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 9.3e-100 367.9 361 52.9
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.6e-99 367.1 358 57.0
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.6e-99 367.1 351 56.7
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 6.6e-98 361.7 360 53.6
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 8.7e-98 361.3 360 55.3
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 9.6e-97 357.8 363 55.4
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 1.3e-96 357.5 365 52.3
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 2.4e-95 353.2 365 51.8
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 1.5e-94 350.5 363 54.3
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 1.5e-94 350.5 357 52.4
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 2.0e-94 350.1 357 50.7
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 3.4e-94 349.4 362 54.1
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 4.5e-94 349.0 357 52.1
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 5.8e-94 348.6 357 54.1
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.3e-93 347.4 360 51.9
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 6.4e-93 345.1 358 50.8
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 8.4e-93 344.7 355 52.7
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 1.1e-92 344.4 361 50.4
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 1.1e-92 344.4 364 51.4
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.4e-92 344.0 354 50.8
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.2e-92 342.8 357 52.4
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 2.1e-91 340.1 358 52.8
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 2.7e-91 339.7 346 52.6
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 4.6e-91 339.0 361 53.2
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 4.6e-91 339.0 354 54.0
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 7.9e-91 338.2 358 50.8
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 7.9e-91 338.2 363 53.2
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 1.8e-90 337.0 314 59.6
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 1.8e-90 337.0 355 51.8
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 5.1e-90 335.5 361 52.1
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 5.1e-90 335.5 357 52.1
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 6.7e-90 335.1 358 50.6
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 6.7e-90 335.1 352 52.0
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 8.7e-90 334.7 360 51.4
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 8.7e-90 334.7 360 51.4
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 8.7e-90 334.7 356 52.8
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 4.3e-89 332.4 358 50.3
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 7.4e-89 331.6 306 58.8
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 1.3e-88 330.9 353 49.6
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 2.1e-88 330.1 360 50.0
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 3.7e-88 329.3 309 57.3
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 1.4e-87 327.4 351 50.1
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 1.2e-86 324.3 364 49.7
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 2.6e-86 323.2 352 49.4
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 3.4e-86 322.8 450 42.7
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 5.8e-86 322.0 363 49.0
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 5.8e-86 322.0 360 48.6
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 7.6e-86 321.6 354 50.3
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 9.9e-86 321.2 352 49.4
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 2.2e-85 320.1 360 49.4
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 1.9e-84 317.0 357 48.2
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.9e-84 317.0 358 49.2
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 9.3e-84 314.7 353 47.3
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 1.6e-83 313.9 358 48.3
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 2.1e-83 313.5 357 49.0
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 7.9e-83 311.6 357 47.3
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 1.3e-82 310.8 358 48.6
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 1.8e-82 310.5 360 48.3
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 3.9e-82 309.3 358 48.9
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 6.7e-82 308.5 357 47.3
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 8.7e-82 308.1 357 47.3
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 8.7e-82 308.1 357 47.6
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 7.4e-81 305.1 351 47.6
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 7.4e-81 305.1 355 49.3
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 8.2e-80 301.6 293 54.6
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 1.1e-79 301.2 358 48.0
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 1.4e-79 300.8 319 49.5
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 3.1e-79 299.7 357 46.5
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 4.0e-79 299.3 354 47.2
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 9.0e-79 298.1 351 46.7
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 9.0e-79 298.1 351 46.7
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 1.5e-78 297.4 351 46.7
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 4.5e-78 295.8 308 51.9
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 1.0e-77 294.7 357 46.2
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 2.2e-77 293.5 393 44.5
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 2.5e-76 290.0 245 58.8
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.2e-76 289.7 398 45.5
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 4.2e-76 289.3 367 45.0
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 4.2e-76 289.3 359 48.2
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 5.5e-76 288.9 342 47.7
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 2.1e-75 287.0 320 48.8
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 7.9e-75 285.0 388 43.6
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 5.7e-73 278.9 410 42.2
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 4.8e-72 275.8 363 44.6
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 6.3e-72 275.4 360 43.3
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 1.4e-71 274.2 329 46.5
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 2.4e-71 273.5 349 47.3
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 4.1e-71 272.7 359 45.4
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 5.3e-71 272.3 418 40.9
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 5.3e-71 272.3 418 40.9
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 5.3e-71 272.3 337 46.3
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 9.0e-71 271.6 358 46.6
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.3e-69 267.7 351 44.4
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.8e-69 266.2 362 47.0
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 4.2e-68 262.7 395 40.8
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 3.0e-66 256.5 271 52.0
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.1e-65 254.6 288 51.4
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.5e-62 244.2 241 54.4
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.6e-62 243.4 432 39.8
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 7.7e-62 241.9 355 41.7
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 8.5e-61 238.4 266 53.8
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 3.2e-60 236.5 294 46.6
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 3.6e-59 233.0 276 49.3
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 4.7e-59 232.6 359 39.8
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 6.1e-59 232.3 275 50.2
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 6.1e-59 232.3 310 41.9
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 2.3e-58 230.3 296 47.0
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 3.0e-58 229.9 267 50.6
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 8.8e-58 228.4 359 41.8
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.8e-56 222.6 321 45.5
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 1.4e-55 221.1 274 46.0
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 1.8e-55 220.7 313 39.6
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.4e-55 220.3 347 38.0
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 1.0e-53 214.9 282 48.2
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.1e-52 211.5 309 38.5
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 9.4e-52 208.4 357 39.2
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 2.7e-51 206.8 314 39.2
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 1.8e-50 204.1 349 40.1
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.2e-48 197.2 363 40.2
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 6.3e-48 195.7 354 37.6
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.1e-47 194.9 201 49.8
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 1.9e-44 184.1 120 81.7
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.2e-43 181.4 262 45.4
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 2.7e-43 180.3 226 50.0
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.3e-40 171.4 190 50.0
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 9.1e-39 165.2 437 30.2
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 2.0e-33 147.5 122 53.3
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 4.4e-33 146.4 163 50.9
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.1e-31 141.7 142 49.3
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.4e-31 140.6 311 40.2
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 2.4e-31 140.6 182 47.8
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 1.2e-30 138.3 141 47.5
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 6.1e-27 125.9 112 61.6
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 1.4e-26 124.8 158 44.9
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 3.0e-26 123.6 103 55.3
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.6e-25 120.6 169 45.0
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 7.5e-25 119.0 103 61.2
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 2.8e-24 117.1 131 50.4
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 3.7e-24 116.7 161 47.2
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 1.1e-23 115.2 177 40.1
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 3.5e-22 110.2 125 48.0
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 5.0e-21 106.3 108 57.4
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 5.8e-17 92.8 216 32.9
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.2e-16 90.9 76 51.3
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 2.4e-15 87.4 72 65.3
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 6.6e-13 79.3 86 47.7
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.2e-09 68.6 53 64.2
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 9.8e-09 65.5 90 43.3
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 1.7e-08 64.7 97 38.1
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 1.9e-07 61.2 45 60.0
Haze_06777 Corylus avellana HOM05D001248 ORTHO05D001183 2.4e-07 60.8 307 26.4
FAN13G3149 Fragaria x ananassa HOM05D001129 ORTHO05D025614 3.2e-07 60.5 122 36.1
FAN02G3483 Fragaria x ananassa HOM05D004223 ORTHO05D025614 4.1e-07 60.1 87 42.5
Cfa000244 Carpinus fangiana HOM05D001248 ORTHO05D001183 5.4e-07 59.7 302 25.2
BcaC06g30680 Brassica carinata HOM05D001248 ORTHO05D001183 1.6e-06 58.2 305 25.2
Thhalv10025897m.g Eutrema salsugineum HOM05D001248 ORTHO05D001183 1.6e-06 58.2 305 26.6
FAN09G1141 Fragaria x ananassa HOM05D001129 ORTHO05D025614 3.5e-06 57.0 48 62.5
Sp7g19960 Schrenkiella parvula HOM05D001248 ORTHO05D001183 3.5e-06 57.0 305 25.9
BcaNung02247 Brassica carinata HOM05D001248 ORTHO05D001183 4.6e-06 56.6 295 25.8
Carub.0007s1961 Capsella rubella HOM05D001248 ORTHO05D001183 7.8e-06 55.8 305 25.9


User provided reference genes

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