Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.4e-265 919.1 464 100.0
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 1.9e-235 818.9 462 90.7
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 1.8e-233 812.4 462 90.5
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 1.3e-228 796.2 462 89.2
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 2.5e-214 748.8 460 83.5
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.0e-212 743.4 460 82.8
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 5.3e-209 731.1 459 80.8
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 7.0e-209 730.7 389 93.8
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 7.0e-209 730.7 463 81.4
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.2e-208 729.9 461 80.3
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 2.6e-203 712.2 466 78.5
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 3.4e-195 685.3 388 88.4
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 4.5e-192 674.9 466 73.2
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 7.7e-192 674.1 466 73.2
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.3e-191 673.3 456 75.7
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 2.2e-191 672.5 456 76.5
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 8.5e-191 670.6 393 84.2
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 5.5e-190 667.9 461 74.6
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 2.1e-189 666.0 393 83.2
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 1.8e-188 662.9 457 72.2
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.8e-188 662.9 457 74.0
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 2.3e-188 662.5 412 80.3
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 3.0e-188 662.1 456 74.3
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 5.2e-188 661.4 456 73.9
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 5.2e-188 661.4 459 74.5
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.5e-187 659.8 457 73.1
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 2.0e-187 659.4 394 82.5
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 2.6e-187 659.1 447 74.9
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 3.4e-187 658.7 456 73.9
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 4.4e-187 658.3 458 72.5
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 4.4e-187 658.3 454 72.7
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 4.4e-187 658.3 395 82.8
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 5.7e-187 657.9 453 72.2
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 5.7e-187 657.9 457 74.2
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 9.8e-187 657.1 453 72.2
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.3e-186 656.8 457 72.0
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.7e-186 655.2 456 71.9
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 4.9e-186 654.8 465 73.1
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 6.3e-186 654.4 436 76.6
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 6.3e-186 654.4 456 73.0
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 8.3e-186 654.1 452 73.2
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.4e-185 653.3 430 76.0
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 1.4e-185 653.3 458 73.1
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.4e-185 653.3 456 73.2
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 3.1e-185 652.1 457 71.8
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.4e-185 651.4 456 71.9
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 5.4e-185 651.4 395 79.7
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.1e-185 650.6 456 72.1
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 1.2e-184 650.2 410 78.8
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 3.5e-184 648.7 456 71.3
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 5.9e-184 647.9 468 70.1
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 7.7e-184 647.5 450 72.4
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 1.3e-183 646.7 461 71.1
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.7e-183 646.4 456 71.7
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 2.9e-183 645.6 457 71.1
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 2.9e-183 645.6 388 82.2
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 2.9e-183 645.6 451 72.1
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 2.9e-183 645.6 440 74.5
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 3.8e-183 645.2 394 81.0
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 6.6e-183 644.4 453 73.7
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 8.6e-183 644.0 450 72.7
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.1e-182 643.7 461 71.1
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.9e-182 642.9 456 72.8
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.9e-182 642.9 422 75.4
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 1.9e-182 642.9 412 77.7
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 2.5e-182 642.5 410 78.3
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 4.2e-182 641.7 456 71.3
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.2e-182 641.7 412 77.7
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.2e-182 641.7 445 73.5
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 4.2e-182 641.7 394 80.5
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 4.2e-182 641.7 397 80.1
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 9.5e-182 640.6 456 72.6
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 2.1e-181 639.4 380 81.8
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.1e-181 639.4 456 71.9
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.8e-181 639.0 393 80.7
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 4.7e-181 638.3 393 79.9
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 4.7e-181 638.3 450 72.2
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 8.0e-181 637.5 392 80.1
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.4e-180 636.7 394 80.2
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 1.8e-180 636.3 380 80.8
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.8e-180 636.3 388 80.2
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 2.3e-180 636.0 378 81.0
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.5e-179 633.3 441 72.1
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 4.4e-179 631.7 382 80.4
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 4.4e-179 631.7 394 78.4
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 5.7e-179 631.3 380 80.3
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 4.9e-178 628.2 458 69.0
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 8.3e-178 627.5 389 79.4
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 1.1e-177 627.1 398 76.1
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 2.4e-177 625.9 398 76.1
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 2.4e-177 625.9 451 71.2
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.6e-176 623.2 381 79.5
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.6e-176 623.2 385 79.7
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 3.5e-176 622.1 461 69.2
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.0e-175 620.5 440 70.7
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.0e-175 620.5 393 78.4
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.3e-175 620.2 380 79.2
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.7e-175 619.8 393 77.4
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.7e-175 619.8 398 76.1
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.0e-172 610.5 474 67.7
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.7e-170 603.2 462 67.1
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.7e-167 593.2 410 71.2
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 2.3e-167 592.8 409 73.6
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 3.0e-167 592.4 400 72.0
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.5e-163 580.1 371 74.4
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.0e-151 540.8 383 68.9
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.3e-151 540.4 356 72.8
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.8e-149 532.7 380 71.3
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.5e-147 526.9 459 61.4
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 2.7e-144 516.2 367 69.5
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.3e-143 513.8 376 67.0
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.1e-140 502.7 382 68.3
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 6.9e-140 501.5 368 69.8
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.7e-135 486.9 343 72.9
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 2.3e-135 486.5 456 59.9
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.5e-134 483.8 367 63.8
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 2.1e-133 479.9 358 64.5
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.2e-131 474.2 359 65.5
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 4.9e-130 468.8 367 62.7
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.1e-127 458.8 275 80.7
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 4.5e-123 445.7 276 77.2
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 4.2e-121 439.1 321 69.8
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 5.7e-118 428.7 289 71.6
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 4.5e-115 419.1 461 52.9
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.1e-113 414.5 372 59.9
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 5.1e-111 405.6 252 78.2
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 4.1e-108 396.0 280 70.0
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 1.4e-105 387.5 264 73.9
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 8.5e-98 361.7 322 61.2
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 3.2e-97 359.8 357 52.9
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 2.6e-94 350.1 210 81.9
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.4e-94 349.4 268 69.0
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 2.5e-89 333.6 329 50.2
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 7.5e-86 322.0 234 70.1
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 4.1e-84 316.2 201 72.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 1.0e-82 311.6 226 70.4
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.0e-74 285.0 211 66.4
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.3e-71 273.9 174 75.9
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 4.7e-64 249.6 176 69.9
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 4.9e-61 239.6 189 65.6
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 5.9e-59 232.6 343 40.5
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 1.9e-57 227.6 294 43.9
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 6.2e-56 222.6 124 81.5
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 1.8e-55 221.1 135 80.7
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.3e-45 188.3 134 72.4
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 8.4e-37 159.1 112 75.0
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.0e-34 152.1 84 83.3
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.0e-34 152.1 106 73.6
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.1e-33 148.7 101 72.3
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 5.6e-33 146.4 111 70.3
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.3e-24 118.6 77 77.9
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 1.5e-22 111.7 85 68.2
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 2.9e-21 107.5 97 59.8
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 1.1e-20 105.5 117 52.1
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 2.5e-17 94.4 59 84.7
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 6.2e-16 89.7 59 81.4
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 4.9e-13 80.1 58 56.9
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 4.9e-13 80.1 68 55.9
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 6.4e-13 79.7 50 70.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.8e-10 71.6 44 75.0


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