Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12635 Trifolium pratense HOM05D004894 ORTHO05D005689 7.1e-90 334.0 175 100.0
Medtr4g062290 Medicago truncatula HOM05D004894 ORTHO05D005689 1.5e-55 219.9 177 69.5
Psat7g222760 Pisum sativum HOM05D004894 ORTHO05D005689 1.0e-48 197.2 174 63.2
TPR.G14508 Trifolium pratense HOM05D004894 ORTHO05D005689 4.0e-48 195.3 178 62.4
TPR.G12614 Trifolium pratense HOM05D004894 ORTHO05D005689 1.3e-46 190.3 175 61.7
TPR.G21506 Trifolium pratense HOM05D004894 ORTHO05D005689 4.2e-42 175.3 184 57.1
TPR.G36147 Trifolium pratense HOM05D004894 ORTHO05D005689 7.2e-42 174.5 185 56.2
TPR.G12588 Trifolium pratense HOM05D000036 ORTHO05D005689 4.7e-41 171.8 146 62.3
TPR.G11233 Trifolium pratense HOM05D004894 ORTHO05D005689 2.0e-39 166.4 178 55.1
TPR.G36461 Trifolium pratense HOM05D004894 ORTHO05D005689 4.9e-38 161.8 148 58.1
Psat3g039600 Pisum sativum HOM05D004894 ORTHO05D005689 9.2e-37 157.5 181 50.8
Psat0s6062g0040 Pisum sativum HOM05D004894 ORTHO05D005689 1.1e-34 150.6 170 49.4
TPR.G9011 Trifolium pratense HOM05D004894 ORTHO05D005689 1.5e-34 150.2 169 51.5
Lalb_Chr03g0035461 Lupinus albus HOM05D004894 ORTHO05D005689 8.0e-33 144.4 167 47.9
Medtr6g038010 Medicago truncatula HOM05D004894 ORTHO05D005689 1.4e-32 143.7 175 50.9
arahy.Tifrunner.gnm1.ann1.VH20NJ Arachis hypogaea HOM05D004894 ORTHO05D005689 2.6e-31 139.4 168 48.8
Glyma.02G080000 Glycine max HOM05D004894 ORTHO05D005689 1.7e-30 136.7 175 46.9
Glyma.16G164600 Glycine max HOM05D004894 ORTHO05D005689 2.2e-30 136.3 175 46.9
Medtr1g055290 Medicago truncatula HOM05D004894 ORTHO05D005689 3.7e-30 135.6 180 48.9
Lalb_Chr03g0035451 Lupinus albus HOM05D004894 ORTHO05D005689 4.9e-30 135.2 158 47.5
Medtr1g054740 Medicago truncatula HOM05D004894 ORTHO05D005689 1.1e-29 134.0 178 47.2
TPR.G30772 Trifolium pratense HOM05D004894 ORTHO05D005689 1.1e-29 134.0 178 48.3
TPR.G30777 Trifolium pratense HOM05D004894 ORTHO05D005689 5.4e-29 131.7 166 48.8
Psat7g222800 Pisum sativum HOM05D004894 ORTHO05D005689 7.0e-29 131.3 104 64.4
TPR.G30770 Trifolium pratense HOM05D004894 ORTHO05D005689 9.2e-29 131.0 166 48.2
Lalb_Chr19g0130151 Lupinus albus HOM05D004894 ORTHO05D005689 1.6e-28 130.2 171 43.9
Lalb_Chr19g0130161 Lupinus albus HOM05D004894 ORTHO05D005689 1.6e-28 130.2 171 43.9
Psat1g100960 Pisum sativum HOM05D004894 ORTHO05D005689 1.6e-28 130.2 177 46.9
Lj2g0017521 Lotus japonicus HOM05D004894 ORTHO05D005689 2.0e-28 129.8 175 45.1
TPR.G22347 Trifolium pratense HOM05D004894 ORTHO05D005689 4.6e-28 128.6 179 41.9
VMungo0464G0707 Vigna mungo HOM05D004894 ORTHO05D005689 7.8e-28 127.9 176 45.5
Lalb_Chr14g0362611 Lupinus albus HOM05D004894 ORTHO05D005689 1.7e-27 126.7 170 45.9
Medtr5g081840 Medicago truncatula HOM05D004894 ORTHO05D005689 3.9e-27 125.6 176 45.5
Ca_10673_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 2.1e-25 119.8 173 45.1
Lalb_Chr19g0130051 Lupinus albus HOM05D004894 ORTHO05D005689 2.1e-25 119.8 174 42.5
Lalb_Chr19g0130071 Lupinus albus HOM05D004894 ORTHO05D005689 2.1e-25 119.8 174 42.5
Lalb_Chr03g0035581 Lupinus albus HOM05D004894 ORTHO05D005689 2.8e-25 119.4 172 42.4
Psat6g191960 Pisum sativum HOM05D004894 ORTHO05D005689 3.6e-25 119.0 177 42.9
Medtr5g081820 Medicago truncatula HOM05D004894 ORTHO05D005689 6.2e-25 118.2 171 42.7
Medtr4g036790 Medicago truncatula HOM05D004894 ORTHO05D005689 1.1e-24 117.5 175 45.1
Phvul.004G091800 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 1.8e-24 116.7 177 42.4
Glyma.20G168700 Glycine max HOM05D004894 ORTHO05D005689 3.1e-24 115.9 188 41.0
Psat6g191520 Pisum sativum HOM05D004894 ORTHO05D005689 4.0e-24 115.5 167 42.5
Lalb_Chr03g0035551 Lupinus albus HOM05D004894 ORTHO05D005689 5.2e-24 115.2 172 42.4
TPR.G14498 Trifolium pratense HOM05D004894 ORTHO05D005689 6.8e-24 114.8 177 43.5
Glyma.10G223000 Glycine max HOM05D004894 ORTHO05D005689 8.9e-24 114.4 189 41.3
Lj5g0011961 Lotus japonicus HOM05D004894 ORTHO05D005689 2.0e-23 113.2 171 42.7
Psat6g191440 Pisum sativum HOM05D004894 ORTHO05D005689 2.6e-23 112.8 130 46.9
Medtr1g054745 Medicago truncatula HOM05D004894 ORTHO05D005689 3.4e-23 112.5 165 45.5
Medtr1g054800 Medicago truncatula HOM05D004894 ORTHO05D005689 4.4e-23 112.1 178 43.8
Glyma.10G140100 Glycine max HOM05D004894 ORTHO05D005689 7.5e-23 111.3 181 39.8
Lalb_Chr03g0035561 Lupinus albus HOM05D004894 ORTHO05D005689 9.8e-23 110.9 173 40.5
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 9.8e-23 110.9 176 37.5
arahy.Tifrunner.gnm1.ann1.P5DTJP Arachis hypogaea HOM05D004894 ORTHO05D005689 1.3e-22 110.5 181 40.9
Psat6g191360 Pisum sativum HOM05D004894 ORTHO05D005689 1.7e-22 110.2 177 40.7
Lalb_Chr19g0130061 Lupinus albus HOM05D004894 ORTHO05D005689 3.7e-22 109.0 173 41.0
Medtr4g065770 Medicago truncatula HOM05D004894 ORTHO05D005689 3.7e-22 109.0 176 43.8
Sabra13G0011900 Salix brachista HOM05D004894 ORTHO05D009560 4.9e-22 108.6 175 39.4
Ca_26810_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 1.1e-21 107.5 106 55.7
Phvul.007G082200 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 1.4e-21 107.1 174 39.1
Medtr1g058550 Medicago truncatula HOM05D004894 ORTHO05D005689 1.9e-21 106.7 146 43.2
arahy.Tifrunner.gnm1.ann1.56TCJ2 Arachis hypogaea HOM05D004894 ORTHO05D005689 5.4e-21 105.1 178 40.4
QL02p037592 Quercus lobata HOM05D004894 ORTHO05D005689 2.7e-20 102.8 168 39.3
QL02p038562 Quercus lobata HOM05D004894 ORTHO05D005689 2.7e-20 102.8 168 39.3
VMungo0720G1196 Vigna mungo HOM05D004894 ORTHO05D005689 4.6e-20 102.1 169 39.6
QL02p038558 Quercus lobata HOM05D004894 ORTHO05D005689 7.8e-20 101.3 151 39.7
QL02p037589 Quercus lobata HOM05D004894 ORTHO05D005689 1.0e-19 100.9 153 39.2
RcHm_v2.0_Chr6g0274541 Rosa chinensis HOM05D004894 ORTHO05D009560 1.3e-19 100.5 171 35.7
Lalb_Chr03g0035431 Lupinus albus HOM05D004894 ORTHO05D005689 2.3e-19 99.8 182 39.0
VMungo0720G2185 Vigna mungo HOM05D004894 ORTHO05D005689 3.9e-19 99.0 169 37.9
TWI34G1211 Tripterygium wilfordii HOM05D004894 ORTHO05D005689 5.1e-19 98.6 181 38.7
Medtr1g098200 Medicago truncatula HOM05D004894 ORTHO05D005689 6.6e-19 98.2 180 38.9
Medtr1g098400 Medicago truncatula HOM05D004894 ORTHO05D005689 6.6e-19 98.2 180 38.9
Lalb_Chr02g0141491 Lupinus albus HOM05D004894 ORTHO05D005689 8.6e-19 97.8 173 39.3
Medtr1g098410 Medicago truncatula HOM05D004894 ORTHO05D005689 8.6e-19 97.8 182 37.4
Psat4g130720 Pisum sativum HOM05D004894 ORTHO05D005689 1.5e-18 97.1 160 38.8
MD10G1032700 Malus domestica HOM05D004894 ORTHO05D005689 4.3e-18 95.5 167 36.5
Medtr6g037920 Medicago truncatula HOM05D004894 ORTHO05D005689 4.3e-18 95.5 166 36.7
Phvul.007G082100 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 4.3e-18 95.5 174 37.9
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 7.3e-18 94.7 176 34.1
Haze_17777 Corylus avellana HOM05D004894 ORTHO05D005689 9.5e-18 94.4 167 35.9
TPR.G36348 Trifolium pratense HOM05D004894 ORTHO05D005689 9.5e-18 94.4 169 36.7
Haze_17792 Corylus avellana HOM05D004894 ORTHO05D005689 2.8e-17 92.8 167 35.3
Lalb_Chr03g0035571 Lupinus albus HOM05D004894 ORTHO05D005689 3.6e-17 92.4 172 37.2
TPR.G4408 Trifolium pratense HOM05D004894 ORTHO05D005689 3.6e-17 92.4 170 38.2
Lalb_Chr03g0035421 Lupinus albus HOM05D004894 ORTHO05D005689 6.2e-17 91.7 182 38.5
Medtr6g037940 Medicago truncatula HOM05D004894 ORTHO05D005689 6.2e-17 91.7 168 34.5
Cfa018298 Carpinus fangiana HOM05D004894 ORTHO05D005689 1.4e-16 90.5 167 34.1
CiPaw.16G009500 Carya illinoinensis HOM05D004894 ORTHO05D005689 1.8e-16 90.1 166 34.3
Glyma.10G223100 Glycine max HOM05D004894 ORTHO05D005689 1.8e-16 90.1 142 40.1
TPR.G28007 Trifolium pratense HOM05D004894 ORTHO05D005689 2.3e-16 89.7 164 35.4
Medtr1g018130 Medicago truncatula HOM05D004894 ORTHO05D005689 1.2e-15 87.4 163 40.5
Psat2g178280 Pisum sativum HOM05D004894 ORTHO05D005689 2.0e-15 86.7 94 47.9
Glyma.02G262600 Glycine max HOM05D004894 ORTHO05D005689 2.6e-15 86.3 170 33.5
Glyma.02G262800 Glycine max HOM05D004894 ORTHO05D005689 2.6e-15 86.3 170 33.5
Glyma.02G262900 Glycine max HOM05D004894 ORTHO05D005689 2.6e-15 86.3 170 33.5
Glyma.02G263000 Glycine max HOM05D004894 ORTHO05D005689 2.6e-15 86.3 170 33.5
TPR.G36349 Trifolium pratense HOM05D004894 ORTHO05D005689 2.6e-15 86.3 165 32.7
Psat6g191560 Pisum sativum HOM05D004894 ORTHO05D005689 3.4e-15 85.9 104 48.1
Ciclev10003770m.g Citrus clementina HOM05D004894 ORTHO05D005689 4.4e-15 85.5 154 36.4
Haze_17791 Corylus avellana HOM05D004894 ORTHO05D009560 4.4e-15 85.5 152 37.5
Psat1g101000 Pisum sativum HOM05D004894 ORTHO05D005689 5.8e-15 85.1 171 35.1
Psat6g191480 Pisum sativum HOM05D004894 ORTHO05D005689 5.8e-15 85.1 104 47.1
Cfa018299 Carpinus fangiana HOM05D004894 ORTHO05D005689 9.9e-15 84.3 146 37.0
Glyma.02G263100 Glycine max HOM05D004894 ORTHO05D005689 9.9e-15 84.3 170 32.9
MD10G1032400 Malus domestica HOM05D004894 ORTHO05D005689 2.2e-14 83.2 128 37.5
Medtr1g098430 Medicago truncatula HOM05D004894 ORTHO05D005689 2.2e-14 83.2 181 34.3
Phvul.008G271200 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 2.2e-14 83.2 183 34.4
TPR.G17037 Trifolium pratense HOM05D004894 ORTHO05D005689 3.7e-14 82.4 119 42.9
Medtr6g037780 Medicago truncatula HOM05D004894 ORTHO05D005689 4.9e-14 82.0 173 34.1
Glyma.02G262700 Glycine max HOM05D004894 ORTHO05D005689 1.1e-13 80.9 171 33.9
Medtr6g037820 Medicago truncatula HOM05D004894 ORTHO05D005689 1.1e-13 80.9 180 34.4
Ciclev10003123m.g Citrus clementina HOM05D004894 ORTHO05D005689 1.9e-13 80.1 152 36.2
FAN24G0571 Fragaria x ananassa HOM05D004894 ORTHO05D005689 1.9e-13 80.1 155 38.1
FAN27G2788 Fragaria x ananassa HOM05D004894 ORTHO05D009560 3.2e-13 79.3 131 40.5
Medtr6g037700 Medicago truncatula HOM05D004894 ORTHO05D005689 7.1e-13 78.2 169 33.1
Lalb_Chr03g0035441 Lupinus albus HOM05D004894 ORTHO05D005689 1.2e-12 77.4 179 35.2
VMungo0647G0768 Vigna mungo HOM05D004894 ORTHO05D005689 1.2e-12 77.4 188 31.9
Medtr6g037800 Medicago truncatula HOM05D004894 ORTHO05D005689 2.1e-12 76.6 155 32.9
Lalb_Chr14g0362601 Lupinus albus HOM05D004894 ORTHO05D005689 4.6e-12 75.5 104 41.3
Glyma.14G020600 Glycine max HOM05D004894 ORTHO05D005689 6.0e-12 75.1 169 33.7
Glyma.14G020900 Glycine max HOM05D004894 ORTHO05D005689 7.8e-12 74.7 169 34.3
Medtr6g039260 Medicago truncatula HOM05D004894 ORTHO05D005689 7.8e-12 74.7 175 32.0
FvH4_2g13220 Fragaria vesca HOM05D004894 ORTHO05D005689 2.3e-11 73.2 160 33.1
FAN24G3270 Fragaria x ananassa HOM05D004894 ORTHO05D005689 3.9e-11 72.4 160 33.1
Medtr6g034800 Medicago truncatula HOM05D004894 ORTHO05D005689 8.6e-11 71.2 176 32.4
Psat1g101040 Pisum sativum HOM05D004894 ORTHO05D005689 1.9e-10 70.1 173 28.9
Duzib041G0061 Durio zibethinus HOM05D007679 ORTHO05D009560 4.3e-10 68.9 185 33.0
Potri.013G013300 Populus trichocarpa HOM05D004894 ORTHO05D005689 4.3e-10 68.9 171 30.4
CiPaw.15G014000 Carya illinoinensis HOM05D004894 ORTHO05D005689 7.3e-10 68.2 156 30.8
Cpa.g.sc49.91 Carica papaya HOM05D007679 ORTHO05D009560 1.2e-09 67.4 149 35.6
Medtr6g034580 Medicago truncatula HOM05D004894 ORTHO05D005689 3.6e-09 65.9 176 27.8
SHI09078 Sapria himalayana HOM05D004894 ORTHO05D005689 6.2e-09 65.1 159 28.9
Cfa018297 Carpinus fangiana HOM05D004894 ORTHO05D005689 8.1e-09 64.7 140 33.6
Thecc.08G156900 Theobroma cacao HOM05D007679 ORTHO05D009560 8.1e-09 64.7 143 35.7
TPR.G28009 Trifolium pratense HOM05D004894 ORTHO05D005689 1.4e-08 63.9 169 30.2
Gorai.009G257300 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.1e-08 62.8 171 32.7
Gohir.A05G245150 Gossypium hirsutum HOM05D007679 ORTHO05D009560 4.0e-08 62.4 184 32.1
Gohir.D05G246400 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.8e-08 61.6 188 32.4
Gorai.009G256800 Gossypium raimondii HOM05D007679 ORTHO05D009560 6.8e-08 61.6 188 30.9
Cpa.g.sc49.90 Carica papaya HOM05D007679 ORTHO05D009560 8.9e-08 61.2 150 33.3
Gohir.A13G213100 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.2e-07 60.8 184 31.0
Gohir.A13G213133 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.2e-07 60.8 184 31.0
Gohir.A13G213166 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.2e-07 60.8 184 31.0
Gohir.A13G213199 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.2e-07 60.8 184 31.0
Gohir.A13G213232 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.2e-07 60.8 184 31.0
Gorai.009G256700 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.2e-07 60.8 184 31.0
Gorai.009G257500 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.2e-07 60.8 171 32.2
Gorai.009G256400 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.5e-07 60.5 184 31.0
Gohir.A05G245372 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.0e-07 60.1 184 31.5
Atru.chr13.2013 Acer truncatum HOM05D004894 ORTHO05D005689 2.6e-07 59.7 152 30.3
Gohir.D05G246600 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.6e-07 59.7 158 32.3
Gorai.009G256300 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.6e-07 59.7 150 32.0
Gorai.009G257400 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.6e-07 59.7 184 29.9
Gorai.N024500 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.6e-07 59.7 188 30.3
Gohir.1Z049488 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.4e-07 59.3 125 34.4
Gohir.A05G245251 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.4e-07 59.3 125 34.4
Gohir.D05G245700 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.4e-07 59.3 188 30.3
Gorai.009G255800 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.4e-07 59.3 188 30.3
Gorai.009G256900 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.4e-07 59.3 184 31.0
Gorai.009G257000 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.4e-07 59.3 184 31.0
Gorai.009G257100 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.4e-07 59.3 184 31.0
Gohir.A05G245201 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.8e-07 58.5 158 32.9
Gohir.A05G245408 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.8e-07 58.5 158 33.5
Gorai.009G256200 Gossypium raimondii HOM05D007679 ORTHO05D009560 5.8e-07 58.5 174 30.5
Sp6g11920 Schrenkiella parvula HOM05D007751 ORTHO05D009813 5.8e-07 58.5 130 27.7
Gohir.A05G244800 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.6e-07 58.2 145 34.5
Gohir.A13G213265 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.6e-07 58.2 184 30.4
Gorai.009G256000 Gossypium raimondii HOM05D007679 ORTHO05D009560 9.9e-07 57.8 184 31.0
Gorai.009G255700 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.3e-06 57.4 164 31.1
Gorai.009G256100 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.3e-06 57.4 174 31.6
Migut.C00970 Erythranthe guttata HOM05D011489 ORTHO05D005689 2.2e-06 56.6 135 30.4
Gohir.1Z049388 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.2e-06 56.6 162 32.1
Gohir.A05G244700 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.2e-06 56.6 184 30.4
Gohir.A05G245300 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.2e-06 56.6 149 33.6
Gohir.D05G246025 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.2e-06 56.6 148 33.8
Gohir.D05G246800 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.2e-06 56.6 171 31.6
AL8G24070 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 4.9e-06 55.5 159 27.7
CSS0042410 Camellia sinensis var. sinensis HOM05D007679 ORTHO05D009560 4.9e-06 55.5 142 33.1
FAN20G3174 Fragaria x ananassa HOM05D004894 ORTHO05D005689 6.4e-06 55.1 159 28.3
BraSC37t46147Z Brassica rapa HOM05D007751 ORTHO05D009813 8.4e-06 54.7 146 31.5
Gohir.A05G245318 Gossypium hirsutum HOM05D007679 ORTHO05D009560 8.4e-06 54.7 140 33.6
Gohir.A05G245500 Gossypium hirsutum HOM05D007679 ORTHO05D009560 8.4e-06 54.7 165 30.9
Medtr3g060470 Medicago truncatula HOM05D004894 ORTHO05D005689 8.4e-06 54.7 181 29.3
Medtr3g060520 Medicago truncatula HOM05D004894 ORTHO05D005689 8.4e-06 54.7 181 29.3
Medtr3g060570 Medicago truncatula HOM05D004894 ORTHO05D005689 8.4e-06 54.7 181 29.3


User provided reference genes

Program Settings