Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 0.0e+00 1238.8 653 100.0
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 0.0e+00 1137.9 653 91.1
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 0.0e+00 1136.7 653 91.4
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 4.9e-309 1063.9 683 82.6
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 1.2e-299 1032.7 656 82.9
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 2.7e-299 1031.6 651 82.8
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.7e-296 1020.8 653 81.9
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 8.9e-295 1016.5 653 81.3
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 8.4e-293 1010.0 653 81.2
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 7.1e-292 1006.9 653 80.9
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 1.1e-284 983.0 652 79.8
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 8.7e-282 973.4 653 79.3
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 8.7e-282 973.4 647 79.8
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 8.7e-266 920.2 651 74.7
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-265 919.8 651 74.7
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-265 919.5 594 80.3
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 4.3e-265 917.9 646 75.1
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 2.5e-257 892.1 646 74.0
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.3e-245 853.2 641 69.9
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 2.9e-245 852.0 666 68.5
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 2.7e-243 845.5 663 65.6
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 6.7e-242 840.9 652 67.8
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.5e-241 839.7 649 68.4
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 9.7e-241 837.0 658 65.0
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 2.8e-240 835.5 686 65.3
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.1e-239 833.6 686 64.3
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 3.1e-239 832.0 649 67.3
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 5.3e-239 831.2 652 67.3
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 5.3e-239 831.2 655 66.9
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 2.0e-238 829.3 652 66.9
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.4e-238 828.6 636 68.7
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 4.5e-238 828.2 658 66.9
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 4.5e-238 828.2 651 66.8
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.7e-238 827.4 649 67.5
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 1.0e-237 827.0 670 66.1
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 6.5e-237 824.3 650 66.8
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 7.2e-236 820.8 649 66.6
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 9.4e-236 820.5 663 66.1
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.2e-235 820.1 651 66.7
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.2e-235 820.1 663 65.9
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.0e-234 817.0 667 66.0
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-234 816.2 636 68.4
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 2.0e-233 812.8 641 66.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.1e-231 807.0 647 64.3
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.1e-231 805.1 661 63.8
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 5.3e-231 804.7 662 64.2
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 2.0e-230 802.7 647 64.0
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 6.5e-229 797.7 652 64.6
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 8.5e-229 797.3 657 62.1
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 7.5e-225 784.3 623 65.7
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.7e-221 773.1 649 62.6
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 6.5e-221 771.2 647 62.4
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.1e-220 770.4 664 63.0
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 5.5e-220 768.1 654 61.8
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 8.0e-219 764.2 644 62.3
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.4e-218 763.5 644 62.0
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 2.3e-218 762.7 656 62.0
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.5e-217 760.0 613 65.1
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.6e-217 759.2 657 61.0
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.4e-217 758.8 647 63.4
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 1.7e-216 756.5 644 60.2
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 1.7e-216 756.5 558 71.7
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 4.8e-216 755.0 649 59.9
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 8.3e-216 754.2 652 62.1
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.4e-215 753.4 644 60.1
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 2.4e-215 752.7 651 60.5
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 7.0e-215 751.1 644 59.9
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 7.0e-215 751.1 644 59.9
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 4.5e-214 748.4 646 59.3
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 7.7e-214 747.7 637 61.7
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.7e-213 746.5 643 59.9
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.1e-212 743.8 658 60.0
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 2.5e-212 742.7 650 60.3
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 2.5e-212 742.7 643 59.6
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 3.3e-212 742.3 646 61.0
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 4.2e-212 741.9 631 60.2
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 3.6e-211 738.8 660 59.8
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 8.0e-211 737.6 631 60.1
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.4e-210 736.9 655 58.2
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 3.0e-210 735.7 644 59.2
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 5.7e-209 731.5 662 59.4
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.3e-208 730.3 640 58.9
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.3e-208 730.3 635 59.2
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 1.1e-207 727.2 662 59.1
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 9.2e-207 724.2 656 58.7
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.6e-206 723.4 665 56.5
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.1e-204 717.2 655 58.8
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.9e-204 716.5 666 55.7
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.1e-203 713.0 701 54.4
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 1.0e-202 710.7 674 56.5
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 2.2e-200 703.0 542 67.2
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 4.9e-200 701.8 594 64.6
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 7.0e-199 698.0 636 58.0
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.2e-198 697.2 664 55.7
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 3.7e-192 675.6 655 55.4
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 8.3e-192 674.5 655 55.6
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 5.4e-191 671.8 650 56.0
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 6.6e-189 664.8 641 55.2
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 2.3e-186 656.4 574 61.3
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 4.0e-186 655.6 536 62.7
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 7.3e-180 634.8 405 83.2
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 5.1e-173 612.1 531 58.8
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 7.3e-172 608.2 537 58.8
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 2.1e-171 606.7 643 52.7
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.0e-169 600.1 554 58.7
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 4.2e-167 592.4 629 50.4
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 2.7e-166 589.7 641 52.3
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.6e-166 589.0 652 50.8
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 2.5e-164 583.2 512 60.2
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 7.3e-164 581.6 630 50.2
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 5.5e-151 538.9 654 46.3
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.4e-143 514.2 653 44.1
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 7.9e-142 508.4 402 64.2
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.8e-138 497.3 650 43.8
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 5.9e-137 492.3 630 45.4
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 2.9e-136 490.0 437 58.8
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.9e-136 490.0 650 43.2
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 5.3e-130 469.2 640 40.8
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 7.7e-129 465.3 639 43.0
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 3.6e-126 456.4 398 63.6
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 9.1e-122 441.8 430 60.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.7e-99 367.9 234 81.6
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 2.9e-88 330.5 367 50.1
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.9e-83 313.9 244 64.3
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 3.6e-78 297.0 251 60.2
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 9.8e-76 288.9 252 65.1
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.1e-66 258.8 436 37.6
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.3e-64 251.9 382 42.7
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.1e-63 248.8 226 61.5
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 6.2e-62 243.0 355 43.9
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 3.8e-59 233.8 203 64.0
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 3.6e-54 217.2 182 64.3
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.1e-47 195.7 307 42.0
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 1.7e-43 181.8 292 39.0
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 3.8e-43 180.6 187 56.7
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.4e-43 179.5 133 69.2
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 9.0e-37 159.5 258 38.8
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 2.5e-34 151.4 175 42.9
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 5.5e-34 150.2 236 43.2
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 8.7e-32 142.9 604 25.0
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 7.4e-31 139.8 96 74.0
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.4e-26 125.6 108 58.3
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 4.2e-26 124.0 93 62.4
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-24 118.6 132 53.0
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-24 117.9 134 53.7
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.7e-23 113.6 141 51.1
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 7.4e-23 113.2 148 50.0
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.6e-22 112.1 86 67.4
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 2.8e-22 111.3 78 73.1
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.2e-22 109.8 117 53.0
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.9e-18 98.6 64 79.7
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-17 95.1 69 71.0
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.6e-17 94.4 67 73.1
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 4.6e-17 94.0 75 61.3
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 5.1e-16 90.5 70 67.1
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-13 82.0 65 66.2
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-12 79.0 46 78.3
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 4.5e-12 77.4 73 56.2
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 1.2e-09 69.3 78 48.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 7.9e-09 66.6 68 52.9
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 8.8e-08 63.2 53 64.2
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 4.4e-07 60.8 54 50.0
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 4.4e-07 60.8 52 61.5
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 7.4e-07 60.1 79 46.8
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 7.4e-07 60.1 122 32.8
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-06 59.3 48 60.4
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 2.8e-06 58.2 65 49.2
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 2.8e-06 58.2 65 49.2


User provided reference genes

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