Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12614 Trifolium pratense HOM05D004894 ORTHO05D005689 9.0e-96 353.6 181 100.0
TPR.G12588 Trifolium pratense HOM05D000036 ORTHO05D005689 1.1e-48 197.2 156 64.7
TPR.G12635 Trifolium pratense HOM05D004894 ORTHO05D005689 3.1e-48 195.7 175 61.7
Medtr4g062290 Medicago truncatula HOM05D004894 ORTHO05D005689 3.0e-43 179.1 175 54.3
Psat7g222760 Pisum sativum HOM05D004894 ORTHO05D005689 5.7e-42 174.9 177 53.7
TPR.G36461 Trifolium pratense HOM05D004894 ORTHO05D005689 3.7e-41 172.2 152 61.2
TPR.G14508 Trifolium pratense HOM05D004894 ORTHO05D005689 2.3e-38 162.9 178 51.1
TPR.G36147 Trifolium pratense HOM05D004894 ORTHO05D005689 8.9e-35 151.0 185 47.0
TPR.G21506 Trifolium pratense HOM05D004894 ORTHO05D005689 2.0e-34 149.8 184 46.2
Psat0s6062g0040 Pisum sativum HOM05D004894 ORTHO05D005689 6.0e-31 138.3 178 46.6
TPR.G11233 Trifolium pratense HOM05D004894 ORTHO05D005689 2.3e-30 136.3 170 48.2
Psat3g039600 Pisum sativum HOM05D004894 ORTHO05D005689 3.9e-30 135.6 181 45.3
arahy.Tifrunner.gnm1.ann1.VH20NJ Arachis hypogaea HOM05D004894 ORTHO05D005689 1.1e-29 134.0 173 43.4
Lalb_Chr03g0035451 Lupinus albus HOM05D004894 ORTHO05D005689 2.0e-26 123.2 166 41.6
Lalb_Chr03g0035461 Lupinus albus HOM05D004894 ORTHO05D005689 5.8e-26 121.7 162 41.4
Medtr1g054740 Medicago truncatula HOM05D004894 ORTHO05D005689 1.3e-25 120.6 178 42.7
Glyma.02G080000 Glycine max HOM05D004894 ORTHO05D005689 2.2e-25 119.8 171 40.4
TPR.G9011 Trifolium pratense HOM05D004894 ORTHO05D005689 2.2e-25 119.8 167 42.5
Medtr1g055290 Medicago truncatula HOM05D004894 ORTHO05D005689 2.9e-25 119.4 181 42.0
TPR.G22347 Trifolium pratense HOM05D004894 ORTHO05D005689 2.9e-25 119.4 179 38.5
TPR.G30777 Trifolium pratense HOM05D004894 ORTHO05D005689 4.9e-25 118.6 168 42.9
Phvul.004G091800 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 8.3e-25 117.9 172 42.4
Glyma.16G164600 Glycine max HOM05D004894 ORTHO05D005689 1.4e-24 117.1 171 41.5
TPR.G30770 Trifolium pratense HOM05D004894 ORTHO05D005689 1.4e-24 117.1 166 41.6
Psat7g222800 Pisum sativum HOM05D004894 ORTHO05D005689 1.9e-24 116.7 107 56.1
TPR.G30772 Trifolium pratense HOM05D004894 ORTHO05D005689 4.1e-24 115.5 170 44.1
Medtr1g054800 Medicago truncatula HOM05D004894 ORTHO05D005689 1.2e-23 114.0 182 41.2
Medtr5g081820 Medicago truncatula HOM05D004894 ORTHO05D005689 4.6e-23 112.1 170 41.2
Psat1g100960 Pisum sativum HOM05D004894 ORTHO05D005689 1.0e-22 110.9 172 43.0
Lalb_Chr19g0130151 Lupinus albus HOM05D004894 ORTHO05D005689 1.3e-22 110.5 165 38.8
Lalb_Chr19g0130161 Lupinus albus HOM05D004894 ORTHO05D005689 1.3e-22 110.5 165 38.8
Lalb_Chr19g0130051 Lupinus albus HOM05D004894 ORTHO05D005689 2.3e-22 109.8 175 36.0
Lalb_Chr19g0130071 Lupinus albus HOM05D004894 ORTHO05D005689 2.3e-22 109.8 175 36.0
Medtr6g038010 Medicago truncatula HOM05D004894 ORTHO05D005689 2.3e-22 109.8 163 41.7
Medtr4g036790 Medicago truncatula HOM05D004894 ORTHO05D005689 3.9e-22 109.0 178 41.6
VMungo0464G0707 Vigna mungo HOM05D004894 ORTHO05D005689 3.9e-22 109.0 167 40.1
Medtr5g081840 Medicago truncatula HOM05D004894 ORTHO05D005689 1.1e-21 107.5 171 41.5
Lj2g0017521 Lotus japonicus HOM05D004894 ORTHO05D005689 1.6e-20 103.6 171 38.0
Medtr6g037940 Medicago truncatula HOM05D004894 ORTHO05D005689 1.6e-20 103.6 172 33.1
Glyma.10G140100 Glycine max HOM05D004894 ORTHO05D005689 8.1e-20 101.3 179 34.6
Medtr6g037920 Medicago truncatula HOM05D004894 ORTHO05D005689 8.1e-20 101.3 145 39.3
Lalb_Chr14g0362611 Lupinus albus HOM05D004894 ORTHO05D005689 1.8e-19 100.1 171 34.5
TPR.G14498 Trifolium pratense HOM05D004894 ORTHO05D005689 2.3e-19 99.8 172 40.1
Lj5g0011961 Lotus japonicus HOM05D004894 ORTHO05D005689 3.1e-19 99.4 168 38.1
Medtr1g098410 Medicago truncatula HOM05D004894 ORTHO05D005689 3.1e-19 99.4 135 40.7
Glyma.10G223000 Glycine max HOM05D004894 ORTHO05D005689 4.0e-19 99.0 191 37.2
Glyma.20G168700 Glycine max HOM05D004894 ORTHO05D005689 6.8e-19 98.2 183 38.3
Medtr1g058550 Medicago truncatula HOM05D004894 ORTHO05D005689 6.8e-19 98.2 142 40.8
Ca_26810_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 1.2e-18 97.4 102 51.0
Medtr4g065770 Medicago truncatula HOM05D004894 ORTHO05D005689 1.2e-18 97.4 146 36.3
VMungo0720G1196 Vigna mungo HOM05D004894 ORTHO05D005689 4.4e-18 95.5 173 35.8
Medtr1g098200 Medicago truncatula HOM05D004894 ORTHO05D005689 7.5e-18 94.7 139 40.3
Medtr1g098400 Medicago truncatula HOM05D004894 ORTHO05D005689 7.5e-18 94.7 139 40.3
arahy.Tifrunner.gnm1.ann1.P5DTJP Arachis hypogaea HOM05D004894 ORTHO05D005689 9.9e-18 94.4 186 33.9
Medtr1g054745 Medicago truncatula HOM05D004894 ORTHO05D005689 9.9e-18 94.4 146 41.8
Psat6g191520 Pisum sativum HOM05D004894 ORTHO05D005689 1.3e-17 94.0 177 36.7
TPR.G36349 Trifolium pratense HOM05D004894 ORTHO05D005689 1.3e-17 94.0 167 33.5
Psat6g191960 Pisum sativum HOM05D004894 ORTHO05D005689 1.7e-17 93.6 179 36.9
arahy.Tifrunner.gnm1.ann1.56TCJ2 Arachis hypogaea HOM05D004894 ORTHO05D005689 3.7e-17 92.4 181 33.7
Psat2g178280 Pisum sativum HOM05D004894 ORTHO05D005689 8.3e-17 91.3 94 50.0
QL02p037589 Quercus lobata HOM05D004894 ORTHO05D005689 1.4e-16 90.5 147 38.1
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 2.4e-16 89.7 162 32.7
Glyma.10G223100 Glycine max HOM05D004894 ORTHO05D005689 3.2e-16 89.4 140 38.6
Phvul.007G082200 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 3.2e-16 89.4 164 34.1
Psat6g191440 Pisum sativum HOM05D004894 ORTHO05D005689 4.1e-16 89.0 131 38.9
QL02p038558 Quercus lobata HOM05D004894 ORTHO05D005689 4.1e-16 89.0 145 37.2
Lalb_Chr03g0035561 Lupinus albus HOM05D004894 ORTHO05D005689 5.4e-16 88.6 176 31.2
VMungo0720G2185 Vigna mungo HOM05D004894 ORTHO05D005689 5.4e-16 88.6 178 34.3
TWI34G1211 Tripterygium wilfordii HOM05D004894 ORTHO05D005689 1.6e-15 87.0 175 35.4
Lalb_Chr03g0035571 Lupinus albus HOM05D004894 ORTHO05D005689 2.7e-15 86.3 175 33.7
TPR.G4408 Trifolium pratense HOM05D004894 ORTHO05D005689 3.5e-15 85.9 149 33.6
Lalb_Chr03g0035581 Lupinus albus HOM05D004894 ORTHO05D005689 6.0e-15 85.1 143 35.0
Phvul.007G082100 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 1.0e-14 84.3 176 35.2
Ca_10673_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 1.3e-14 84.0 175 34.9
Medtr1g098430 Medicago truncatula HOM05D004894 ORTHO05D005689 2.3e-14 83.2 134 38.1
MD10G1032700 Malus domestica HOM05D004894 ORTHO05D005689 3.0e-14 82.8 159 34.6
Medtr1g018130 Medicago truncatula HOM05D004894 ORTHO05D005689 3.9e-14 82.4 145 37.9
Psat6g191360 Pisum sativum HOM05D004894 ORTHO05D005689 5.1e-14 82.0 137 37.2
RcHm_v2.0_Chr6g0274541 Rosa chinensis HOM05D004894 ORTHO05D009560 6.6e-14 81.6 171 31.0
Medtr6g037800 Medicago truncatula HOM05D004894 ORTHO05D005689 2.5e-13 79.7 147 33.3
QL02p037592 Quercus lobata HOM05D004894 ORTHO05D005689 2.5e-13 79.7 165 35.8
QL02p038562 Quercus lobata HOM05D004894 ORTHO05D005689 2.5e-13 79.7 165 35.8
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 4.3e-13 79.0 157 31.2
Cfa018299 Carpinus fangiana HOM05D004894 ORTHO05D005689 5.6e-13 78.6 161 34.8
Sabra13G0011900 Salix brachista HOM05D004894 ORTHO05D009560 7.3e-13 78.2 175 29.7
Lalb_Chr03g0035551 Lupinus albus HOM05D004894 ORTHO05D005689 9.6e-13 77.8 139 35.3
Lalb_Chr19g0130061 Lupinus albus HOM05D004894 ORTHO05D005689 1.2e-12 77.4 156 34.0
Haze_17791 Corylus avellana HOM05D004894 ORTHO05D009560 1.1e-11 74.3 153 34.6
Lalb_Chr02g0141491 Lupinus albus HOM05D004894 ORTHO05D005689 1.1e-11 74.3 182 31.3
Lalb_Chr19g0125751 Lupinus albus HOM05D067330 ORTHO05D005689 1.1e-11 74.3 177 34.5
TPR.G17037 Trifolium pratense HOM05D004894 ORTHO05D005689 1.1e-11 74.3 115 40.0
CiPaw.16G009500 Carya illinoinensis HOM05D004894 ORTHO05D005689 1.4e-11 73.9 164 29.3
Lalb_Chr03g0035431 Lupinus albus HOM05D004894 ORTHO05D005689 1.8e-11 73.6 184 32.6
Ciclev10003770m.g Citrus clementina HOM05D004894 ORTHO05D005689 8.9e-11 71.2 147 34.0
Lalb_Chr03g0035421 Lupinus albus HOM05D004894 ORTHO05D005689 1.2e-10 70.9 156 35.9
Gorai.009G257300 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.6e-10 69.7 166 33.7
Haze_17777 Corylus avellana HOM05D004894 ORTHO05D005689 3.4e-10 69.3 160 31.2
FAN24G3270 Fragaria x ananassa HOM05D004894 ORTHO05D005689 3.4e-10 69.3 146 32.9
MD10G1032400 Malus domestica HOM05D004894 ORTHO05D005689 3.4e-10 69.3 125 32.8
FvH4_2g13220 Fragaria vesca HOM05D004894 ORTHO05D005689 4.4e-10 68.9 158 31.0
Gorai.009G256800 Gossypium raimondii HOM05D007679 ORTHO05D009560 4.4e-10 68.9 166 33.7
Haze_17792 Corylus avellana HOM05D004894 ORTHO05D005689 9.9e-10 67.8 160 31.2
Gohir.A05G245408 Gossypium hirsutum HOM05D007679 ORTHO05D009560 9.9e-10 67.8 164 33.5
CiPaw.15G014000 Carya illinoinensis HOM05D004894 ORTHO05D005689 1.7e-09 67.0 153 32.7
Gohir.D05G246400 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.7e-09 67.0 166 33.1
Gorai.009G256400 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.7e-09 67.0 166 33.1
Psat6g191480 Pisum sativum HOM05D004894 ORTHO05D005689 1.7e-09 67.0 105 39.0
Gorai.009G256900 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.2e-09 66.6 166 33.1
Gorai.009G257000 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.2e-09 66.6 166 33.1
Gorai.009G257100 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.2e-09 66.6 166 33.1
Gorai.N024500 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.2e-09 66.6 166 33.1
Lalb_Chr19g0125741 Lupinus albus HOM05D067330 ORTHO05D005689 2.9e-09 66.2 179 30.2
Medtr6g039260 Medicago truncatula HOM05D004894 ORTHO05D005689 3.8e-09 65.9 174 27.6
Cfa018298 Carpinus fangiana HOM05D004894 ORTHO05D005689 6.4e-09 65.1 162 30.2
Gohir.A13G213100 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.4e-09 65.1 166 31.9
Gohir.A13G213232 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.4e-09 65.1 166 31.9
Psat6g191560 Pisum sativum HOM05D004894 ORTHO05D005689 6.4e-09 65.1 105 38.1
Thecc.08G156900 Theobroma cacao HOM05D007679 ORTHO05D009560 6.4e-09 65.1 158 28.5
Gohir.A13G213133 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.9e-08 63.5 166 31.3
Gohir.A13G213166 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.9e-08 63.5 166 31.3
Gohir.A13G213199 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.9e-08 63.5 166 31.3
Gohir.A13G213265 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.9e-08 63.5 166 31.3
Gohir.D05G246600 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.9e-08 63.5 145 33.8
Gorai.009G256100 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.4e-08 63.2 162 31.5
Gorai.009G256700 Gossypium raimondii HOM05D007679 ORTHO05D009560 2.4e-08 63.2 166 31.9
SHI09078 Sapria himalayana HOM05D004894 ORTHO05D005689 2.4e-08 63.2 151 31.8
Gohir.A05G245372 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.2e-08 62.8 166 31.9
Gorai.009G256200 Gossypium raimondii HOM05D007679 ORTHO05D009560 4.2e-08 62.4 166 31.3
Gohir.1Z049488 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.1e-08 61.6 145 31.0
Gohir.A05G245201 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.1e-08 61.6 166 30.1
Gohir.A05G245251 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.1e-08 61.6 145 31.0
Gorai.009G256000 Gossypium raimondii HOM05D007679 ORTHO05D009560 7.1e-08 61.6 146 32.2
Gorai.009G257500 Gossypium raimondii HOM05D007679 ORTHO05D009560 7.1e-08 61.6 166 31.3
Duzib041G0061 Durio zibethinus HOM05D007679 ORTHO05D009560 9.3e-08 61.2 151 31.1
Gohir.A05G245150 Gossypium hirsutum HOM05D007679 ORTHO05D009560 9.3e-08 61.2 166 30.1
Gorai.009G255800 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.2e-07 60.8 166 30.7
Gohir.D05G245700 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.6e-07 60.5 166 30.7
FAN27G2788 Fragaria x ananassa HOM05D004894 ORTHO05D009560 2.1e-07 60.1 127 33.9
Glyma.14G020600 Glycine max HOM05D004894 ORTHO05D005689 2.7e-07 59.7 139 29.5
Lalb_Chr14g0362601 Lupinus albus HOM05D004894 ORTHO05D005689 2.7e-07 59.7 101 35.6
Gohir.D05G246075 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.5e-07 59.3 164 31.7
FAN24G0571 Fragaria x ananassa HOM05D004894 ORTHO05D005689 4.6e-07 58.9 152 31.6
Glyma.14G020900 Glycine max HOM05D004894 ORTHO05D005689 4.6e-07 58.9 139 29.5
Gohir.D05G246100 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.0e-07 58.5 145 33.1
Gorai.009G257600 Gossypium raimondii HOM05D007679 ORTHO05D009560 6.0e-07 58.5 166 31.3
Lalb_Chr03g0035441 Lupinus albus HOM05D004894 ORTHO05D005689 6.0e-07 58.5 158 34.8
Thecc.08G157300 Theobroma cacao HOM05D007679 ORTHO05D009560 1.0e-06 57.8 149 30.9
Gorai.009G255600 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.7e-06 57.0 142 31.7
FAN20G3174 Fragaria x ananassa HOM05D004894 ORTHO05D005689 3.0e-06 56.2 162 27.8
Gohir.D05G252300 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.0e-06 56.2 144 25.7
Migut.C00970 Erythranthe guttata HOM05D011489 ORTHO05D005689 6.6e-06 55.1 162 25.3
Gohir.D05G245800 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.6e-06 55.1 166 30.1
Gohir.D05G246025 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.6e-06 55.1 146 30.8
Gohir.D05G246050 Gossypium hirsutum HOM05D007679 ORTHO05D009560 8.7e-06 54.7 166 30.7
Manes.02G182301 Manihot esculenta HOM05D004894 ORTHO05D005689 8.7e-06 54.7 167 24.0


User provided reference genes

Program Settings