Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.4e-96 356.7 239 100.0
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.7e-57 226.9 239 57.7
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 6.6e-54 214.9 234 63.7
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 8.6e-54 214.5 164 73.8
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.6e-52 210.3 229 58.1
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 2.7e-47 193.0 247 49.8
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.0e-46 191.0 243 54.7
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 3.0e-46 189.5 220 59.1
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 3.9e-46 189.1 112 92.0
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 4.3e-45 185.7 175 54.3
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 7.3e-45 184.9 131 68.7
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 2.1e-44 183.3 160 60.6
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 2.8e-44 183.0 152 66.4
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 3.6e-44 182.6 131 67.2
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.1e-43 181.0 121 72.7
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 1.5e-42 177.2 217 53.5
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.6e-42 176.4 140 60.7
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.6e-42 176.4 138 60.9
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 4.4e-42 175.6 129 64.3
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 7.6e-42 174.9 134 64.9
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 1.7e-41 173.7 104 82.7
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 2.2e-41 173.3 136 74.3
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 2.4e-40 169.9 126 63.5
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.2e-40 169.5 121 68.6
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 5.4e-40 168.7 212 51.9
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 7.1e-40 168.3 122 68.9
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 9.3e-40 167.9 272 46.7
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.1e-39 166.8 152 58.6
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.5e-39 166.0 129 63.6
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.5e-39 166.0 129 63.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 4.6e-39 165.6 155 61.3
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 7.8e-39 164.9 124 62.9
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 6.6e-38 161.8 157 58.0
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.9e-37 160.2 153 58.2
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.9e-37 160.2 233 45.1
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.3e-37 159.5 211 54.0
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.1e-36 156.8 127 60.6
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 6.2e-36 155.2 134 60.4
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 6.2e-36 155.2 240 43.3
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 6.2e-36 155.2 240 43.3
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 8.1e-36 154.8 247 43.3
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.1e-35 154.5 136 60.3
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 1.4e-35 154.1 87 80.5
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 1.8e-35 153.7 164 59.8
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.8e-35 153.7 250 44.8
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.0e-35 152.5 235 45.1
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 6.9e-35 151.8 226 44.2
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 6.9e-35 151.8 100 74.0
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.2e-34 151.0 165 50.3
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.2e-34 151.0 131 55.7
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 2.0e-34 150.2 219 45.7
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 2.0e-34 150.2 116 60.3
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 3.4e-34 149.4 159 54.1
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 4.5e-34 149.1 105 66.7
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.8e-34 148.7 128 60.2
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 7.6e-34 148.3 105 61.9
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 9.9e-34 147.9 128 60.2
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 4.9e-33 145.6 105 61.9
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 6.4e-33 145.2 139 55.4
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 8.4e-33 144.8 114 61.4
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.9e-32 143.7 105 63.8
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 5.4e-32 142.1 143 54.5
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 9.3e-32 141.4 107 60.7
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 9.3e-32 141.4 107 60.7
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.2e-31 141.0 103 68.0
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.2e-31 141.0 107 60.7
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.2e-31 141.0 89 75.3
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.2e-31 141.0 93 71.0
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 1.6e-31 140.6 102 61.8
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.6e-31 140.6 118 55.9
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 2.7e-31 139.8 167 52.1
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 4.6e-31 139.0 74 85.1
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 6.0e-31 138.7 105 62.9
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.9e-31 138.3 247 48.6
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 7.9e-31 138.3 114 59.6
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 1.8e-30 137.1 141 52.5
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 2.3e-30 136.7 250 41.6
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.3e-30 136.7 90 71.1
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 3.9e-30 136.0 107 59.8
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 3.9e-30 136.0 107 59.8
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.9e-30 136.0 91 70.3
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 3.9e-30 136.0 156 48.1
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 5.1e-30 135.6 82 73.2
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.1e-30 135.6 211 48.8
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 5.1e-30 135.6 215 42.3
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 5.1e-30 135.6 91 68.1
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 1.1e-29 134.4 118 54.2
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 2.5e-29 133.3 158 54.4
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 9.6e-29 131.3 107 57.9
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 9.6e-29 131.3 107 57.9
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 6.2e-28 128.6 100 62.0
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 5.3e-27 125.6 157 51.0
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.2e-26 124.4 138 50.7
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 1.5e-26 124.0 127 59.8
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 2.6e-26 123.2 75 70.7
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 7.6e-26 121.7 93 65.6
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 9.9e-26 121.3 92 62.0
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 9.9e-26 121.3 253 36.0
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.7e-25 120.6 93 64.5
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 2.4e-24 116.7 81 70.4
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 4.6e-23 112.5 105 53.3
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 4.6e-23 112.5 92 63.0
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.0e-22 111.3 61 80.3
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 5.6e-21 105.5 207 37.2
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 9.6e-21 104.8 77 67.5
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.3e-20 104.4 74 60.8
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.6e-20 104.0 85 61.2
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 6.2e-20 102.1 77 62.3
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 1.1e-19 101.3 82 64.6
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 2.4e-19 100.1 60 73.3
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 4.0e-19 99.4 133 41.4
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 6.9e-19 98.6 108 50.9
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 6.9e-19 98.6 135 42.2
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 4.5e-18 95.9 90 52.2
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 5.8e-18 95.5 82 57.3
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 3.8e-17 92.8 74 60.8
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 3.8e-17 92.8 86 47.7
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 8.4e-17 91.7 79 48.1
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.4e-16 90.9 98 49.0
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 1.4e-16 90.9 98 49.0
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.4e-16 90.9 243 36.2
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.9e-16 90.5 65 69.2
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 3.2e-16 89.7 103 52.4
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 4.2e-16 89.4 139 46.8
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 4.2e-16 89.4 100 49.0
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.2e-15 87.8 140 42.1
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.6e-15 87.4 64 68.8
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 3.5e-15 86.3 61 65.6
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 6.0e-15 85.5 149 45.6
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.3e-14 84.3 61 70.5
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.3e-14 84.3 147 38.1
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 3.0e-14 83.2 54 72.2
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.0e-14 83.2 85 44.7
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 6.7e-14 82.0 73 57.5
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 8.7e-14 81.6 43 88.4
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 8.7e-14 81.6 68 69.1
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.5e-13 80.9 156 35.9
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.5e-13 80.1 70 60.0
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 2.5e-13 80.1 129 38.8
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 4.3e-13 79.3 210 33.3
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 4.3e-13 79.3 65 60.0
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.3e-12 77.8 145 36.6
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.2e-12 77.0 64 53.1
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 3.7e-12 76.3 56 62.5
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 1.1e-11 74.7 50 64.0
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 1.1e-11 74.7 62 54.8
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 6.9e-11 72.0 54 63.0
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 6.9e-11 72.0 56 58.9
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.2e-10 71.2 73 53.4
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 4.5e-10 69.3 71 45.1
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 1.3e-09 67.8 160 36.2
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.4e-08 64.3 144 34.0
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.9e-08 63.9 120 38.3
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 2.5e-08 63.5 49 61.2
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 7.2e-08 62.0 50 66.0
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.2e-07 61.2 49 69.4
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.7e-07 60.1 46 67.4
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 3.6e-07 59.7 45 66.7
Lsat_1_v5_gn_5_140420 Lactuca sativa HOM05D003803 ORTHO05D004456 4.6e-07 59.3 103 42.7
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 4.6e-07 59.3 45 68.9
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 4.6e-07 59.3 57 59.6
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 6.1e-07 58.9 55 52.7
Hund20657 Selenicereus undatus HOM05D002369 ORTHO05D002435 6.1e-07 58.9 59 50.8
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 1.8e-06 57.4 57 47.4
ClCG05G004760 Citrullus lanatus HOM05D002369 ORTHO05D002435 1.8e-06 57.4 55 54.5
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 2.3e-06 57.0 63 54.0
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 5.1e-06 55.8 50 58.0
MELO3C006489.2 Cucumis melo HOM05D002369 ORTHO05D002435 6.7e-06 55.5 55 52.7
Medtr4g125015 Medicago truncatula HOM05D003803 ORTHO05D004456 6.7e-06 55.5 49 85.7
CsaV3_3G012780 Cucumis sativus L. HOM05D002369 ORTHO05D002435 8.8e-06 55.1 55 50.9
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 8.8e-06 55.1 42 64.3


User provided reference genes

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