Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 9.4e-187 656.8 343 100.0
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 2.5e-123 446.0 284 84.2
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 1.2e-117 427.2 285 78.6
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 1.7e-111 406.8 289 77.2
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 4.5e-104 382.1 282 73.0
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 1.3e-103 380.6 287 70.7
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 2.9e-103 379.4 258 81.0
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 1.6e-101 373.6 286 69.2
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.4e-100 370.5 309 68.9
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 3.3e-99 365.9 287 74.2
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 2.2e-98 363.2 287 73.5
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 4.1e-97 359.0 287 70.7
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 1.0e-95 354.4 309 68.6
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 1.5e-88 330.5 313 62.3
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 5.0e-87 325.5 286 65.0
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 9.4e-86 321.2 287 61.0
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 1.2e-85 320.9 285 63.5
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.6e-85 319.3 284 62.3
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 3.0e-84 316.2 286 64.3
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 3.9e-84 315.8 291 64.6
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 6.7e-84 315.1 289 60.2
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 1.5e-83 313.9 292 62.0
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 2.0e-83 313.5 346 54.6
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 3.3e-83 312.8 282 62.4
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 5.7e-83 312.0 293 60.4
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 1.3e-82 310.8 287 58.9
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.7e-82 310.5 294 58.2
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.7e-82 310.5 285 60.0
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 3.7e-82 309.3 287 63.4
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 3.7e-82 309.3 292 59.6
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.1e-81 307.8 294 62.2
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 1.1e-81 307.8 289 62.6
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.1e-81 307.8 291 60.5
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 1.8e-81 307.0 293 61.1
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 2.4e-81 306.6 288 60.1
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 3.1e-81 306.2 291 56.7
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 4.1e-81 305.8 290 57.6
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 1.6e-80 303.9 293 61.8
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 2.0e-80 303.5 193 75.6
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 2.6e-80 303.1 293 56.7
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 5.9e-80 302.0 282 58.9
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 7.7e-80 301.6 282 58.2
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 7.7e-80 301.6 285 60.7
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 1.0e-79 301.2 290 60.0
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 1.3e-79 300.8 286 59.4
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.3e-79 300.8 289 58.5
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.3e-79 300.8 289 61.6
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 1.7e-79 300.4 282 58.9
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.2e-79 300.1 289 58.5
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.2e-79 300.1 289 58.5
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 2.9e-79 299.7 191 74.3
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 3.8e-79 299.3 295 58.6
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 5.0e-79 298.9 284 57.7
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 5.0e-79 298.9 289 58.1
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 8.5e-79 298.1 284 58.1
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 1.1e-78 297.7 286 57.7
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.1e-78 297.7 287 58.9
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.9e-78 297.0 294 60.5
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.5e-78 296.6 296 55.4
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 3.2e-78 296.2 292 55.8
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 3.2e-78 296.2 288 59.0
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 4.2e-78 295.8 285 59.6
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 4.2e-78 295.8 297 55.9
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 5.5e-78 295.4 283 57.2
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 5.5e-78 295.4 283 57.2
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 7.2e-78 295.0 291 58.4
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 9.4e-78 294.7 295 59.3
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 2.1e-77 293.5 283 56.5
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 2.1e-77 293.5 318 54.4
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 2.7e-77 293.1 284 59.2
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 2.7e-77 293.1 295 56.6
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 6.1e-77 292.0 284 57.0
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 8.0e-77 291.6 286 58.7
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 1.0e-76 291.2 287 57.8
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.0e-76 291.2 285 58.6
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.0e-76 291.2 324 51.2
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 1.0e-76 291.2 196 70.9
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 1.4e-76 290.8 285 58.2
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.8e-76 290.4 287 55.4
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 3.0e-76 289.7 288 56.6
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 4.0e-76 289.3 285 56.8
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.5e-75 287.3 294 53.7
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 2.6e-75 286.6 300 57.3
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 3.4e-75 286.2 290 54.5
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 5.7e-75 285.4 189 74.6
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 7.5e-75 285.0 193 73.6
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 2.2e-74 283.5 189 74.1
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.1e-73 281.2 292 54.1
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.1e-73 281.2 294 55.4
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 1.1e-73 281.2 174 79.9
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 1.8e-73 280.4 306 54.9
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 7.0e-73 278.5 222 64.4
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 1.6e-72 277.3 310 51.0
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.7e-72 276.6 289 55.7
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 2.7e-72 276.6 200 66.5
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 3.5e-72 276.2 190 71.1
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 4.5e-72 275.8 284 53.2
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 5.9e-72 275.4 290 52.4
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 7.7e-72 275.0 290 55.2
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 1.3e-71 274.2 293 52.6
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 8.5e-71 271.6 285 54.7
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 1.5e-70 270.8 289 57.1
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 1.5e-70 270.8 287 56.1
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 3.2e-70 269.6 273 54.6
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 4.2e-70 269.2 309 52.4
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 5.5e-70 268.9 192 67.7
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 7.2e-70 268.5 259 53.3
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 1.2e-69 267.7 203 64.5
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 1.0e-68 264.6 171 73.7
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 1.8e-68 263.8 186 69.4
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 2.0e-67 260.4 298 49.7
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 6.8e-60 235.3 190 60.5
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 1.5e-59 234.2 245 54.3
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 2.0e-59 233.8 191 57.1
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 1.7e-58 230.7 203 56.7
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 2.9e-55 219.9 200 53.5
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 2.9e-55 219.9 311 50.8
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 6.6e-55 218.8 203 57.6
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 3.2e-49 199.9 180 57.2
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 5.8e-43 179.1 166 55.4
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 5.1e-39 166.0 151 54.3
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 2.5e-38 163.7 116 69.8
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 2.5e-38 163.7 106 74.5
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 4.3e-38 162.9 137 59.9
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 1.7e-34 151.0 159 50.9
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 7.1e-33 145.6 84 84.5
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 9.2e-33 145.2 84 85.7
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 3.0e-31 140.2 200 38.5
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-28 131.7 83 78.3
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 7.6e-27 125.6 125 52.0
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 4.9e-26 122.9 68 88.2
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 6.0e-24 115.9 200 33.0
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 6.6e-23 112.5 149 37.6
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 1.5e-14 84.7 56 76.8
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 2.8e-13 80.5 148 39.2
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.1e-12 78.6 146 37.0
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 5.8e-11 72.8 84 51.2
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 9.3e-09 65.5 43 69.8
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 1.6e-08 64.7 47 70.2
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 1.8e-07 61.2 49 65.3
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 2.3e-07 60.8 45 71.1
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 2.3e-07 60.8 37 73.0
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 3.9e-07 60.1 150 31.3
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 9.6e-06 55.5 28 92.9


User provided reference genes

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