Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 2.7e-173 612.1 351 100.0
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 2.3e-119 433.0 353 74.8
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 1.2e-115 420.6 352 74.4
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 8.3e-114 414.5 358 76.5
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 3.7e-85 319.3 358 58.7
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 1.3e-77 294.3 357 60.2
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 4.5e-75 285.8 354 58.2
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 3.2e-73 279.6 356 59.6
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 2.7e-72 276.6 354 59.9
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 2.0e-67 260.4 374 53.2
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 4.1e-52 209.5 390 37.9
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 2.9e-50 203.4 364 51.1
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 5.0e-50 202.6 367 51.2
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 1.5e-49 201.1 386 39.1
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 2.5e-49 200.3 371 50.9
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 8.0e-48 195.3 366 45.1
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.1e-46 191.4 365 47.4
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 1.5e-46 191.0 321 44.2
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 5.7e-46 189.1 389 43.2
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 1.2e-43 181.4 367 45.5
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 5.9e-43 179.1 386 35.8
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 7.7e-43 178.7 396 38.6
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 7.7e-43 178.7 385 37.1
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 1.0e-42 178.3 390 39.2
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 1.3e-42 177.9 397 35.5
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 2.2e-42 177.2 384 43.5
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 2.9e-42 176.8 364 46.4
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 5.0e-42 176.0 386 41.7
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 4.2e-41 172.9 355 47.6
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 9.4e-41 171.8 290 52.8
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 9.4e-41 171.8 392 37.8
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.2e-40 171.4 385 36.4
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 1.2e-40 171.4 364 34.9
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 3.6e-40 169.9 384 37.2
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 8.0e-40 168.7 414 39.4
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 1.0e-39 168.3 359 32.6
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 1.4e-39 167.9 375 42.4
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 2.3e-39 167.2 389 42.2
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 2.6e-38 163.7 407 31.7
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 3.4e-38 163.3 354 32.5
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 7.5e-38 162.2 400 42.8
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 9.8e-38 161.8 191 51.3
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 1.7e-37 161.0 371 38.3
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 3.7e-37 159.8 338 35.8
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 4.8e-37 159.5 306 34.6
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 4.8e-37 159.5 390 36.7
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 1.4e-36 157.9 368 42.4
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 2.4e-36 157.1 381 33.3
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 3.1e-36 156.8 368 41.6
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 3.1e-36 156.8 368 41.6
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 3.1e-36 156.8 202 45.0
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 1.2e-35 154.8 371 41.5
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 2.7e-35 153.7 350 37.1
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 2.7e-35 153.7 377 35.3
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 5.9e-35 152.5 339 38.9
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 7.7e-35 152.1 373 41.3
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 1.7e-34 151.0 359 35.7
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 2.9e-34 150.2 333 46.2
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 3.8e-34 149.8 359 35.7
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 5.0e-34 149.4 413 36.3
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 8.5e-34 148.7 379 38.3
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 1.1e-33 148.3 354 41.8
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 1.9e-33 147.5 381 41.5
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 3.2e-33 146.7 337 41.5
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 7.2e-33 145.6 378 39.2
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 1.2e-32 144.8 414 35.7
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 1.6e-32 144.4 327 33.9
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 2.7e-32 143.7 202 44.1
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 2.7e-32 143.7 364 41.2
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 4.7e-32 142.9 391 40.2
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 4.7e-32 142.9 351 43.9
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 1.0e-31 141.7 312 36.9
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 2.3e-31 140.6 364 34.1
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 6.8e-31 139.0 339 36.3
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 6.8e-31 139.0 339 36.0
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 8.8e-31 138.7 377 38.5
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 1.2e-30 138.3 311 37.6
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 3.4e-30 136.7 389 30.8
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 3.4e-30 136.7 428 31.5
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 5.7e-30 136.0 420 33.1
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 7.5e-30 135.6 274 50.4
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 9.8e-30 135.2 243 39.1
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 1.7e-29 134.4 372 38.7
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 2.2e-29 134.0 380 37.6
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 6.3e-29 132.5 390 38.7
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 1.1e-28 131.7 367 36.0
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 1.8e-28 131.0 293 35.5
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 2.4e-28 130.6 409 32.5
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 3.1e-28 130.2 337 40.7
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 5.4e-28 129.4 386 33.7
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 4.5e-27 126.3 356 39.6
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 4.5e-27 126.3 424 33.7
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 4.5e-27 126.3 380 32.1
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 7.7e-27 125.6 361 34.6
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.3e-26 124.8 356 34.8
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 1.1e-25 121.7 361 36.6
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 2.5e-25 120.6 365 35.6
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 2.5e-25 120.6 350 41.7
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 3.3e-25 120.2 315 31.7
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 5.6e-25 119.4 179 43.6
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 1.6e-24 117.9 303 40.3
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 2.1e-24 117.5 196 40.3
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.4e-23 114.8 190 41.1
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 1.8e-23 114.4 342 40.6
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 6.8e-23 112.5 309 37.5
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 1.5e-22 111.3 136 46.3
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 1.5e-22 111.3 93 60.2
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 1.4e-20 104.8 365 38.1
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 1.4e-20 104.8 100 58.0
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 2.4e-20 104.0 327 39.8
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 7.8e-19 99.0 192 40.6
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 1.5e-14 84.7 214 31.3
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 9.8e-14 82.0 85 52.9
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 1.1e-12 78.6 97 43.3
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 2.4e-12 77.4 90 48.9
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 1.2e-11 75.1 69 50.7
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 1.0e-10 72.0 49 71.4
FAN07G1029 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.9e-09 67.8 140 39.3
TAR624G0439 Trochodendron aralioides HOM05D005773 ORTHO05D006930 5.6e-09 66.2 113 38.1
Pp3c14_16980 Physcomitrium patens HOM05D029403 ORTHO05D006930 4.7e-08 63.2 92 37.0
Pp3c17_20330 Physcomitrium patens HOM05D029403 ORTHO05D006930 4.7e-08 63.2 54 51.9
Atru.chr9.2474 Acer truncatum HOM05D000366 ORTHO05D001950 6.2e-08 62.8 138 35.5
arahy.Tifrunner.gnm1.ann1.V4J88K Arachis hypogaea HOM05D005773 ORTHO05D006930 1.8e-07 61.2 137 38.0
Mapoly0035s0141 Marchantia polymorpha HOM05D005773 ORTHO05D006930 1.8e-07 61.2 114 34.2
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 2.3e-07 60.8 50 56.0
SMO356G0556 Selaginella moellendorffii HOM05D005773 ORTHO05D006930 6.8e-07 59.3 98 35.7
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 4.4e-06 56.6 46 58.7


User provided reference genes

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