Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 5.6e-56 220.7 111 100.0
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 3.8e-52 208.0 111 91.9
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 1.1e-51 206.5 111 91.0
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 1.2e-50 203.0 111 87.4
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 6.6e-49 197.2 109 88.1
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 1.5e-48 196.1 109 88.1
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 4.4e-45 184.5 109 81.7
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 2.2e-44 182.2 111 84.7
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 3.2e-43 178.3 106 83.0
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 3.9e-41 171.4 109 76.1
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 5.1e-41 171.0 111 75.7
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 5.1e-41 171.0 109 74.3
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 3.3e-40 168.3 109 76.1
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 4.3e-40 167.9 109 74.3
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 7.3e-40 167.2 109 76.1
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 7.3e-40 167.2 111 73.0
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 1.3e-39 166.4 109 72.5
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 1.6e-39 166.0 108 75.0
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 1.6e-39 166.0 109 75.2
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 3.6e-39 164.9 106 72.6
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 4.8e-39 164.5 109 73.4
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 4.8e-39 164.5 111 72.1
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 4.8e-39 164.5 111 73.9
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 8.1e-39 163.7 109 71.6
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 1.1e-38 163.3 109 73.4
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 1.4e-38 162.9 109 70.6
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.4e-38 162.2 109 73.4
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 3.1e-38 161.8 106 75.5
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 3.1e-38 161.8 109 70.6
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 3.1e-38 161.8 109 72.5
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 4.0e-38 161.4 109 74.3
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 4.0e-38 161.4 106 75.5
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 6.9e-38 160.6 111 73.0
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 1.2e-37 159.8 111 72.1
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 1.2e-37 159.8 106 74.5
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 2.0e-37 159.1 106 69.8
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 2.0e-37 159.1 109 67.9
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 2.6e-37 158.7 98 77.6
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 2.6e-37 158.7 109 74.3
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 3.4e-37 158.3 105 74.3
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 3.4e-37 158.3 105 74.3
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 3.4e-37 158.3 108 70.4
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 3.4e-37 158.3 109 67.9
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 4.5e-37 157.9 109 69.7
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 4.5e-37 157.9 107 72.0
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 1.7e-36 156.0 107 71.0
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 1.7e-36 156.0 109 70.6
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 2.2e-36 155.6 111 66.7
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 2.2e-36 155.6 107 68.2
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 2.9e-36 155.2 111 68.5
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 4.9e-36 154.5 109 68.8
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 8.4e-36 153.7 107 66.4
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 8.4e-36 153.7 111 65.8
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 8.4e-36 153.7 101 73.3
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 1.1e-35 153.3 106 70.8
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 1.1e-35 153.3 109 68.8
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 1.4e-35 152.9 107 67.3
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.4e-35 152.9 106 68.9
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 1.4e-35 152.9 106 68.9
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 3.2e-35 151.8 109 64.2
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 7.1e-35 150.6 101 70.3
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 9.3e-35 150.2 111 65.8
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 1.2e-34 149.8 109 66.1
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 3.5e-34 148.3 111 63.1
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 7.9e-34 147.1 98 70.4
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 1.0e-33 146.7 108 66.7
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 1.0e-33 146.7 103 68.0
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 1.3e-33 146.4 104 68.3
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 1.8e-33 146.0 103 67.0
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 2.3e-33 145.6 98 71.4
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 3.0e-33 145.2 109 63.3
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 3.9e-33 144.8 105 66.7
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 6.7e-33 144.1 100 69.0
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 6.7e-33 144.1 103 67.0
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 2.5e-32 142.1 109 61.5
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 3.3e-32 141.7 104 67.3
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 3.3e-32 141.7 124 58.9
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 5.6e-32 141.0 107 64.5
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 5.6e-32 141.0 132 55.3
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 1.3e-31 139.8 99 69.7
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.3e-31 139.8 104 65.4
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 2.1e-31 139.0 106 63.2
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 2.1e-31 139.0 105 63.8
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 2.8e-31 138.7 105 63.8
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 3.7e-31 138.3 101 67.3
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 4.8e-31 137.9 109 63.3
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 4.8e-31 137.9 104 64.4
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 6.2e-31 137.5 105 60.0
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 1.4e-30 136.3 112 59.8
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 1.4e-30 136.3 109 61.5
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 1.8e-30 136.0 108 63.0
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 3.1e-30 135.2 111 62.2
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 3.1e-30 135.2 101 66.3
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 5.3e-30 134.4 109 62.4
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 1.2e-29 133.3 109 64.2
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 1.2e-29 133.3 109 61.5
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 2.6e-29 132.1 111 60.4
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 3.4e-29 131.7 108 61.1
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 4.5e-29 131.3 105 61.9
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 4.5e-29 131.3 105 61.9
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 4.5e-29 131.3 105 61.9
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 5.8e-29 131.0 105 61.0
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 7.6e-29 130.6 103 61.2
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 1.7e-28 129.4 105 59.0
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 3.8e-28 128.3 98 62.2
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 6.4e-28 127.5 100 63.0
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 6.4e-28 127.5 100 63.0
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 8.4e-28 127.1 103 59.2
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.9e-27 125.9 100 62.0
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.9e-27 125.9 100 62.0
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 2.4e-27 125.6 103 58.3
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 4.2e-27 124.8 103 58.3
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 4.2e-27 124.8 103 58.3
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 4.2e-27 124.8 103 58.3
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 1.2e-26 123.2 105 56.2
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 1.2e-26 123.2 100 59.0
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 6.0e-26 120.9 101 63.4
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 3.0e-25 118.6 112 55.4
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 5.6e-24 114.4 101 54.5
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 9.6e-24 113.6 74 79.7
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 1.6e-23 112.8 101 54.5
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 1.8e-22 109.4 74 71.6
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 2.6e-21 105.5 99 55.6
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 7.6e-21 104.0 95 52.6
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 2.9e-20 102.1 85 58.8
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 8.4e-20 100.5 98 45.9
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 2.5e-19 99.0 73 69.9
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 9.3e-19 97.1 86 59.3
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 1.8e-14 82.8 99 42.4
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 5.3e-14 81.3 70 50.0
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 3.8e-12 75.1 109 45.0
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 5.0e-12 74.7 73 52.1
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 2.5e-11 72.4 65 53.8
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 7.2e-11 70.9 71 50.7
SEGI_15077 Sequoiadendron giganteum HOM05D002017 ORTHO05D007006 8.8e-09 63.9 65 44.6
ClCG08G001190 Citrullus lanatus HOM05D005755 ORTHO05D007006 1.5e-08 63.2 60 51.7
CBR_g23899 Chara braunii HOM05D005755 ORTHO05D007006 2.5e-08 62.4 96 38.5


User provided reference genes

Program Settings