Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 3.1e-196 688.3 369 100.0
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.3e-117 427.2 368 67.7
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 1.8e-114 416.8 368 65.8
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 2.8e-88 329.7 367 55.9
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 7.2e-84 315.1 370 52.2
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 6.8e-82 308.5 368 53.3
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 5.0e-77 292.4 369 49.3
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 4.3e-76 289.3 369 49.1
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 6.1e-75 285.4 370 48.4
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 8.9e-74 281.6 371 48.2
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.7e-72 277.3 370 47.8
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.4e-71 274.2 368 47.0
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.4e-71 274.2 352 50.0
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.4e-71 274.2 368 48.1
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.4e-71 274.2 371 47.4
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 2.4e-71 273.5 370 48.9
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 3.2e-71 273.1 371 45.6
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 5.4e-71 272.3 373 46.9
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 7.0e-71 271.9 370 47.8
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.2e-70 271.2 368 46.2
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.6e-70 270.8 375 49.1
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.6e-70 270.8 371 46.9
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.0e-70 270.4 387 47.3
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.7e-70 270.0 371 46.6
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 3.5e-70 269.6 371 46.9
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 3.0e-69 266.5 373 46.6
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.1e-68 264.6 323 48.3
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-68 264.6 370 45.4
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.9e-68 263.8 370 47.6
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.9e-68 263.8 372 46.0
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.5e-68 263.5 370 49.2
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 4.3e-68 262.7 370 45.9
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 7.3e-68 261.9 370 44.9
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.5e-68 261.5 370 44.9
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 9.5e-68 261.5 370 45.9
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 6.2e-67 258.8 377 46.2
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.8e-66 257.3 373 46.1
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.1e-66 256.5 371 44.7
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 8.9e-66 255.0 373 45.0
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.0e-65 253.8 372 45.2
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.0e-65 253.8 374 45.5
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.7e-64 250.8 370 44.9
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.7e-64 250.8 372 44.9
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.2e-64 250.4 371 44.7
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 2.9e-64 250.0 388 44.3
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 6.4e-64 248.8 371 44.2
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.4e-63 246.9 371 45.3
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 3.2e-63 246.5 372 45.2
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.1e-63 246.1 371 43.7
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 9.2e-63 245.0 372 43.8
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 1.2e-62 244.6 373 45.6
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 2.1e-62 243.8 404 43.3
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 2.7e-62 243.4 337 51.3
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 2.7e-62 243.4 369 44.7
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 4.6e-62 242.7 401 44.4
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 4.6e-62 242.7 373 43.4
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 6.0e-62 242.3 373 42.4
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 7.8e-62 241.9 372 42.2
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.0e-61 241.5 332 45.5
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.0e-61 241.5 336 45.2
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 3.0e-61 240.0 370 41.9
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 3.9e-61 239.6 370 42.4
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 3.9e-61 239.6 372 42.7
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 3.9e-61 239.6 372 44.9
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.5e-60 237.7 385 41.8
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.9e-60 237.3 373 43.2
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 7.3e-60 235.3 375 43.7
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.6e-59 233.0 371 41.8
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.1e-58 231.5 369 43.4
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.1e-58 231.5 373 44.0
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.4e-58 231.1 368 44.0
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 6.8e-58 228.8 371 43.1
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 3.4e-57 226.5 371 42.9
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.4e-57 226.1 371 42.0
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.7e-56 224.2 417 41.0
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.9e-56 223.4 371 42.6
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 4.9e-56 222.6 376 42.8
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 6.4e-56 222.2 373 40.2
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 8.3e-56 221.9 372 43.3
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 4.1e-55 219.5 369 41.5
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 5.1e-53 212.6 370 40.8
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.1e-51 207.2 372 39.5
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 6.2e-51 205.7 371 39.6
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.4e-50 204.5 371 37.7
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 3.1e-50 203.4 371 38.3
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 3.1e-50 203.4 373 39.9
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 3.1e-50 203.4 373 39.9
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 4.0e-50 203.0 371 41.0
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 5.2e-50 202.6 370 39.5
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 5.2e-50 202.6 370 40.8
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.2e-49 201.4 369 39.0
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 4.4e-49 199.5 369 39.0
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 5.8e-49 199.1 371 38.8
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.7e-48 197.6 336 39.6
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.2e-48 197.2 369 39.8
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.8e-48 196.4 369 39.6
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 3.8e-48 196.4 373 39.7
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.9e-47 194.1 371 37.2
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.7e-45 187.6 382 38.5
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 8.7e-45 185.3 370 37.8
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.5e-44 184.5 373 39.4
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.5e-44 183.7 375 37.1
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 4.3e-44 183.0 379 38.0
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 5.6e-44 182.6 378 37.3
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.3e-43 181.4 325 37.2
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 8.1e-43 178.7 309 43.4
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.0e-42 176.4 357 37.3
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.5e-41 174.5 371 36.7
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 2.6e-41 173.7 369 35.8
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 5.8e-41 172.6 351 35.9
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 7.6e-41 172.2 369 35.5
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 2.9e-40 170.2 370 35.1
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 3.8e-40 169.9 368 35.3
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 3.8e-40 169.9 367 35.1
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.1e-39 168.3 368 35.3
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 4.2e-39 166.4 344 36.3
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 4.6e-38 162.9 344 35.2
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 6.0e-38 162.5 124 62.9
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 7.8e-38 162.2 357 36.1
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.9e-37 159.8 360 35.0
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 6.6e-37 159.1 344 34.9
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.9e-36 157.5 344 34.6
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 6.2e-35 152.5 351 35.0
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.4e-34 150.6 343 34.4
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.4e-34 150.6 364 34.6
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 2.4e-34 150.6 364 34.6
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 4.0e-34 149.8 242 41.3
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 7.6e-33 145.6 349 32.7
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.3e-32 144.8 150 52.0
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 4.9e-32 142.9 352 34.1
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 8.4e-32 142.1 303 37.3
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.4e-31 141.4 366 33.6
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.9e-31 141.0 392 32.7
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 2.4e-31 140.6 371 33.4
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.6e-30 137.9 358 31.8
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-30 137.9 157 51.0
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 1.3e-29 134.8 172 47.7
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.3e-29 134.0 303 36.0
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.6e-28 128.6 372 31.5
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 2.8e-27 127.1 319 34.2
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 8.1e-27 125.6 125 54.4
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 3.1e-26 123.6 180 48.3
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 5.8e-25 119.4 149 43.6
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 5.8e-25 119.4 175 48.6
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 8.4e-24 115.5 146 46.6
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.9e-23 114.4 151 43.7
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.5e-23 114.0 151 43.7
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 3.2e-23 113.6 153 39.2
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.5e-22 110.2 343 32.1
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.5e-22 110.2 273 35.5
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 5.7e-20 102.8 315 31.4
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.3e-19 101.7 128 56.2
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 1.3e-19 101.7 160 45.6
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 2.8e-19 100.5 128 55.5
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.1e-18 98.6 103 58.3
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-18 98.6 159 39.6
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.8e-18 97.8 271 31.0
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 4.1e-18 96.7 319 30.1
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.5e-17 93.2 378 28.3
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 5.0e-16 89.7 369 27.1
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 8.4e-16 89.0 116 44.0
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.5e-15 87.4 83 54.2
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 2.5e-15 87.4 146 39.7
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 2.5e-15 87.4 146 39.7
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.5e-15 86.3 164 41.5
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 3.3e-12 77.0 247 31.6
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 3.3e-12 77.0 247 31.6
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 9.7e-12 75.5 223 32.3
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.6e-11 74.7 86 47.7
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 2.4e-10 70.9 106 48.1
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.1e-10 70.5 46 69.6
Medtr5g064760 Medicago truncatula HOM05D003516 ORTHO05D004068 1.0e-08 65.5 131 44.3
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.3e-08 65.1 60 51.7
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 2.2e-08 64.3 169 30.8
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 1.1e-07 62.0 107 46.7
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 2.7e-06 57.4 48 56.2
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 7.9e-06 55.8 91 48.4


User provided reference genes

Program Settings