Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 3.6e-230 801.2 399 100.0
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.1e-210 736.5 396 91.4
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 6.2e-206 720.7 399 89.7
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 5.8e-196 687.6 395 85.8
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 2.7e-193 678.7 397 85.4
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 1.5e-188 662.9 410 81.0
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 2.6e-188 662.1 399 83.7
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 4.5e-188 661.4 354 91.8
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 7.6e-188 660.6 395 84.6
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 8.4e-187 657.1 390 84.1
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 5.5e-178 627.9 366 82.0
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 3.5e-177 625.2 389 79.4
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 1.3e-176 623.2 380 78.2
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 1.8e-176 622.9 409 75.3
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 2.5e-175 619.0 372 79.8
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 2.5e-175 619.0 374 79.4
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 3.3e-175 618.6 406 76.1
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 9.6e-175 617.1 396 75.5
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 2.8e-174 615.5 373 78.6
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 4.8e-174 614.8 373 78.6
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 6.2e-174 614.4 367 80.4
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 8.2e-174 614.0 374 78.9
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 1.8e-173 612.8 406 75.1
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 2.4e-173 612.5 412 74.3
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 2.4e-173 612.5 372 78.2
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 4.0e-173 611.7 402 74.1
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 4.0e-173 611.7 367 80.1
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 5.3e-173 611.3 366 79.8
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 5.3e-173 611.3 403 74.2
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 6.9e-173 610.9 411 74.5
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 6.9e-173 610.9 366 79.8
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 9.0e-173 610.5 416 74.0
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 9.0e-173 610.5 373 78.0
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 1.2e-172 610.1 363 79.9
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 2.0e-172 609.4 402 75.1
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 2.0e-172 609.4 366 79.8
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 2.0e-172 609.4 373 78.0
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 5.8e-172 607.8 412 73.5
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 7.6e-172 607.4 372 78.8
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 1.7e-171 606.3 408 73.0
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 2.2e-171 605.9 414 72.0
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 2.2e-171 605.9 410 72.4
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 3.8e-171 605.1 343 83.4
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 6.5e-171 604.4 365 79.7
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 8.4e-171 604.0 366 79.2
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 8.4e-171 604.0 370 78.6
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 8.4e-171 604.0 408 72.8
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 1.4e-170 603.2 366 79.0
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 1.9e-170 602.8 376 78.2
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 3.2e-170 602.1 399 74.4
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 4.2e-170 601.7 409 72.9
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.2e-169 600.1 408 73.3
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 1.3e-168 596.7 360 79.2
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 1.3e-168 596.7 372 77.4
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 1.8e-168 596.3 405 72.8
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 8.7e-168 594.0 356 80.3
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 7.4e-167 590.9 387 74.2
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 2.2e-166 589.3 413 72.2
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 2.2e-166 589.3 342 80.7
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 4.1e-165 585.1 414 71.0
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 4.1e-165 585.1 393 76.3
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 5.3e-165 584.7 369 77.0
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 1.3e-163 580.1 364 76.4
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 5.0e-163 578.2 415 69.9
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 8.5e-163 577.4 375 75.2
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 2.3e-160 569.3 346 77.5
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 2.3e-160 569.3 346 77.5
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 3.9e-160 568.5 345 79.7
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 1.1e-159 567.0 362 75.1
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 4.3e-159 565.1 347 76.9
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.3e-158 563.5 361 75.1
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 3.7e-158 562.0 361 74.8
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 6.3e-158 561.2 412 68.9
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 1.4e-157 560.1 364 74.2
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 2.4e-157 559.3 364 74.2
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 2.4e-157 559.3 364 74.2
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 6.9e-157 557.8 364 73.9
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 1.0e-155 553.9 352 75.3
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 2.2e-155 552.7 365 72.3
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 3.8e-155 552.0 366 73.0
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 5.0e-155 551.6 393 68.4
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 4.2e-154 548.5 364 72.8
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 7.2e-154 547.7 327 81.3
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 2.3e-152 542.7 366 72.1
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 3.0e-152 542.3 365 71.0
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 8.8e-152 540.8 382 71.7
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 1.1e-151 540.4 364 73.4
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 2.6e-151 539.3 369 73.7
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 4.8e-150 535.0 320 78.8
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 6.3e-150 534.6 372 70.4
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 2.6e-148 529.3 364 71.2
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 2.6e-148 529.3 393 66.7
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 5.0e-147 525.0 390 68.2
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 8.5e-147 524.2 379 68.6
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 1.0e-144 517.3 298 82.6
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 6.7e-144 514.6 368 67.1
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 3.7e-142 508.8 378 66.1
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 1.1e-141 507.3 362 68.5
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 7.7e-140 501.1 298 83.6
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 1.1e-138 497.3 343 69.7
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 8.8e-136 487.6 364 69.0
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 1.5e-135 486.9 294 81.0
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 9.1e-133 477.6 351 64.7
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 2.7e-132 476.1 376 65.4
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 1.0e-128 464.2 381 63.0
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 5.2e-128 461.8 374 61.8
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 1.0e-123 447.6 351 61.0
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 5.0e-123 445.3 372 60.8
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.6e-121 439.1 253 81.4
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 1.8e-117 426.8 256 80.1
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 6.0e-100 368.6 212 83.0
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 2.9e-94 349.7 205 80.5
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 1.8e-88 330.5 204 77.5
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 3.9e-83 312.8 213 73.7
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 5.8e-79 298.9 204 68.1
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 8.1e-65 251.9 274 47.4
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 1.8e-51 207.6 417 35.3
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 3.6e-44 183.3 123 77.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 8.8e-43 178.7 116 69.8
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 2.0e-42 177.6 245 43.3
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 6.3e-33 146.0 102 64.7
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 8.5e-30 135.6 76 84.2
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.1e-29 135.2 83 72.3
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 7.2e-29 132.5 74 83.8
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 1.6e-28 131.3 164 45.1
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.1e-16 92.0 108 47.2
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 2.4e-16 90.9 108 46.3
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.7e-15 87.4 74 66.2
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 3.2e-13 80.5 98 43.9
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.2e-13 80.5 44 77.3
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 7.2e-13 79.3 93 49.5
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.3e-11 74.3 112 43.8
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 1.4e-08 65.1 48 60.4
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 7.7e-07 59.3 30 86.7


User provided reference genes

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