Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 9.4e-119 430.3 225 100.0
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 1.2e-102 376.7 226 90.3
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 4.4e-100 368.2 225 85.3
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 4.7e-94 348.2 228 83.3
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 1.4e-85 320.1 227 75.8
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 3.0e-80 302.4 227 72.7
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 1.2e-78 297.0 227 71.8
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 1.8e-77 293.1 228 71.9
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 7.6e-76 287.7 227 71.8
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 2.9e-75 285.8 227 71.4
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 3.2e-74 282.3 220 70.9
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 1.1e-69 267.3 226 62.4
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 1.5e-68 263.5 228 61.0
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 1.3e-67 260.4 231 61.9
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 1.3e-67 260.4 233 60.9
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 1.1e-66 257.3 190 68.4
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 2.4e-66 256.1 226 59.7
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 7.1e-66 254.6 223 60.5
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 1.6e-65 253.4 237 59.9
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 2.3e-64 249.6 194 66.5
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 3.9e-64 248.8 233 57.9
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 3.3e-63 245.7 229 59.0
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 1.6e-62 243.4 193 65.8
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 3.6e-62 242.3 251 55.4
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 3.6e-62 242.3 201 63.7
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 6.2e-62 241.5 192 65.1
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 2.4e-61 239.6 195 64.1
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 2.4e-61 239.6 219 57.1
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 4.0e-61 238.8 219 57.1
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 6.9e-61 238.0 233 57.1
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 9.0e-61 237.7 225 58.2
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 1.2e-60 237.3 233 57.5
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 7.6e-60 234.6 211 59.2
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 7.6e-60 234.6 211 58.3
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 7.6e-60 234.6 193 62.2
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 1.3e-59 233.8 193 62.7
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 1.7e-59 233.4 230 55.7
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 2.2e-59 233.0 208 58.2
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 2.2e-59 233.0 238 56.3
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 2.9e-59 232.6 204 61.8
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 8.4e-59 231.1 193 62.7
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 1.1e-58 230.7 217 56.2
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 2.4e-58 229.6 196 62.2
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 9.3e-58 227.6 212 59.4
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 1.6e-57 226.9 215 58.1
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 2.1e-57 226.5 206 56.8
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 2.7e-57 226.1 227 53.3
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 3.5e-57 225.7 184 64.1
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 1.3e-56 223.8 196 57.7
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 3.0e-56 222.6 221 55.2
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 3.0e-56 222.6 233 52.8
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 3.9e-56 222.2 186 61.3
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 3.9e-56 222.2 196 57.1
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 5.1e-56 221.9 163 63.2
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 1.1e-55 220.7 197 57.9
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 1.5e-55 220.3 218 55.5
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 2.5e-55 219.5 192 59.4
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 7.4e-55 218.0 217 53.9
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 1.3e-54 217.2 231 55.0
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 2.8e-54 216.1 193 60.6
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 3.6e-54 215.7 226 54.9
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 8.1e-54 214.5 201 59.2
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 8.1e-54 214.5 193 60.6
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 8.1e-54 214.5 224 53.6
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 1.1e-53 214.2 193 60.1
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 1.1e-53 214.2 198 56.1
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 1.1e-53 214.2 214 56.5
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 2.4e-53 213.0 211 57.3
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 4.0e-53 212.2 132 81.1
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 9.0e-53 211.1 232 50.9
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 9.0e-53 211.1 203 60.6
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 2.0e-52 209.9 193 59.6
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 2.0e-52 209.9 228 54.4
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 2.6e-52 209.5 212 53.8
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 2.4e-50 203.0 187 56.1
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 7.9e-49 198.0 203 56.7
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 1.5e-47 193.7 166 57.8
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 7.4e-47 191.4 203 54.2
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 9.6e-47 191.0 172 58.7
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 1.1e-45 187.6 176 58.0
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 5.3e-45 185.3 229 51.1
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 7.6e-44 181.4 165 57.6
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 1.3e-43 180.6 271 43.9
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.1e-42 177.6 175 53.7
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.9e-42 176.8 175 53.1
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 9.3e-42 174.5 228 47.4
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 4.6e-41 172.2 213 48.8
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.1e-39 167.5 191 46.6
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 1.5e-39 167.2 230 43.9
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 2.8e-38 162.9 184 46.2
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 4.1e-37 159.1 164 51.8
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 6.9e-37 158.3 162 54.9
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 4.2e-34 149.1 180 44.4
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 5.5e-34 148.7 207 46.9
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 2.7e-33 146.4 208 41.8
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 2.2e-30 136.7 135 51.9
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 3.7e-30 136.0 189 42.9
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 3.7e-30 136.0 98 66.3
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.4e-26 124.0 89 68.5
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 3.9e-24 115.9 89 62.9
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 1.4e-21 107.5 98 56.1
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 3.1e-21 106.3 112 50.0
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 2.0e-20 103.6 219 36.1
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 3.4e-20 102.8 123 45.5
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 4.0e-08 62.8 55 54.5
Dinv39425 Davidia involucrata HOM05D002064 ORTHO05D002118 3.7e-06 56.2 46 52.2
SGA_v2.0_scaffold54G19517 Striga asiatica HOM05D007221 ORTHO05D009204 4.8e-06 55.8 62 51.6


User provided reference genes

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