Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 9.9e-52 206.5 101 100.0
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 1.7e-22 109.4 88 63.6
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 3.7e-22 108.2 89 59.6
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 1.1e-21 106.7 89 61.8
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 1.8e-21 105.9 89 60.7
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 3.1e-21 105.1 89 59.6
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 1.2e-20 103.2 89 59.6
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 1.5e-20 102.8 89 58.4
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 3.4e-20 101.7 89 58.4
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 3.4e-20 101.7 89 58.4
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 4.5e-20 101.3 89 58.4
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 5.0e-19 97.8 88 58.0
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 1.1e-18 96.7 88 58.0
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 1.9e-18 95.9 88 54.5
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 2.5e-18 95.5 88 56.8
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 3.2e-18 95.1 88 55.7
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 4.2e-18 94.7 88 53.4
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 4.2e-18 94.7 88 56.8
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 4.2e-18 94.7 88 55.7
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 4.2e-18 94.7 88 52.3
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 5.5e-18 94.4 88 55.7
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 5.5e-18 94.4 88 52.3
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 5.5e-18 94.4 88 52.3
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.2e-17 93.2 88 51.1
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 1.2e-17 93.2 88 53.4
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.6e-17 92.8 88 53.4
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 1.6e-17 92.8 88 52.3
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 3.6e-17 91.7 88 53.4
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 3.6e-17 91.7 88 55.7
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 3.6e-17 91.7 88 53.4
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 3.6e-17 91.7 88 53.4
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 4.7e-17 91.3 88 54.5
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 6.1e-17 90.9 88 55.7
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 7.9e-17 90.5 88 52.3
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 7.9e-17 90.5 88 55.7
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 7.9e-17 90.5 88 53.4
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 7.9e-17 90.5 88 53.4
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 1.0e-16 90.1 88 54.5
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 1.4e-16 89.7 88 52.3
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 1.4e-16 89.7 88 51.1
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 1.4e-16 89.7 88 51.1
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 1.8e-16 89.4 88 51.1
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 2.3e-16 89.0 88 51.1
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 3.0e-16 88.6 88 52.3
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 3.9e-16 88.2 88 51.1
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 3.9e-16 88.2 88 48.9
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 3.9e-16 88.2 88 50.0
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 6.7e-16 87.4 88 52.3
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 8.8e-16 87.0 88 51.1
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 8.8e-16 87.0 88 53.4
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 8.8e-16 87.0 88 51.1
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 1.1e-15 86.7 93 50.5
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 1.1e-15 86.7 88 50.0
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 1.5e-15 86.3 88 51.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 1.5e-15 86.3 88 51.1
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 1.5e-15 86.3 88 51.1
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 2.0e-15 85.9 88 50.0
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.6e-15 85.5 88 47.7
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 2.6e-15 85.5 88 50.0
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 3.3e-15 85.1 88 50.0
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 3.3e-15 85.1 88 50.0
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 3.3e-15 85.1 88 50.0
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 3.3e-15 85.1 88 50.0
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 4.4e-15 84.7 88 52.3
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 5.7e-15 84.3 88 51.1
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 7.4e-15 84.0 88 50.0
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 7.4e-15 84.0 88 52.3
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 9.7e-15 83.6 88 48.9
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 1.3e-14 83.2 88 51.1
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 1.3e-14 83.2 88 51.1
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 1.3e-14 83.2 70 51.4
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 1.7e-14 82.8 88 51.1
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 1.7e-14 82.8 88 50.0
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 2.2e-14 82.4 88 48.9
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 2.8e-14 82.0 88 47.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 2.8e-14 82.0 88 46.6
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 6.3e-14 80.9 88 47.7
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 6.3e-14 80.9 93 47.3
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 8.2e-14 80.5 89 47.2
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 2.4e-13 79.0 88 45.5
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 3.1e-13 78.6 70 54.3
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 4.1e-13 78.2 88 45.5
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 3.5e-12 75.1 88 44.3
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 5.0e-11 71.2 89 43.8
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 1.5e-10 69.7 85 49.4
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 9.4e-10 67.0 51 64.7
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 9.4e-10 67.0 57 54.4
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 9.4e-10 67.0 101 46.5
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 1.2e-09 66.6 71 49.3
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 1.6e-09 66.2 88 36.4
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.7e-09 64.7 67 50.7
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 6.1e-09 64.3 70 47.1
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 8.8e-08 60.5 88 38.6
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 4.4e-07 58.2 67 47.8
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 4.8e-06 54.7 89 39.3


User provided reference genes

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