Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 6.7e-290 1000.0 505 100.0
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 1.0e-245 853.2 490 88.8
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 9.5e-244 846.7 459 93.7
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 2.1e-243 845.5 503 87.7
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 8.4e-216 753.8 490 79.8
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 5.6e-212 741.1 490 78.2
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 7.6e-209 730.7 490 78.0
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 2.1e-203 712.6 490 79.0
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 1.1e-202 710.3 490 75.7
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 2.8e-195 685.6 487 73.5
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 1.4e-194 683.3 491 71.5
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 4.0e-194 681.8 463 76.2
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 2.6e-193 679.1 491 71.5
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 8.2e-171 604.4 484 62.8
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 1.1e-170 604.0 484 63.0
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 1.2e-169 600.5 494 62.6
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 2.5e-167 592.8 518 60.2
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 2.5e-167 592.8 484 62.2
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 7.2e-167 591.3 489 59.9
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 2.3e-165 586.3 485 61.6
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 5.1e-165 585.1 500 60.8
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 1.7e-163 580.1 499 59.1
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.7e-163 580.1 489 60.9
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 1.7e-163 580.1 499 60.1
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 1.4e-162 577.0 495 60.2
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 3.1e-162 575.9 493 59.2
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 3.1e-162 575.9 500 61.0
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 5.3e-162 575.1 506 59.1
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 1.5e-161 573.5 485 60.2
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 2.6e-161 572.8 463 63.3
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 6.5e-160 568.2 501 59.5
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 8.5e-160 567.8 442 64.5
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 5.5e-159 565.1 437 63.6
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 2.1e-158 563.1 493 58.8
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 2.1e-158 563.1 487 59.1
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 5.7e-156 555.1 487 58.3
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 2.8e-155 552.7 493 59.0
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 3.5e-153 545.8 501 58.3
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.0e-152 544.3 496 58.1
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 3.8e-152 542.3 494 57.1
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 7.2e-151 538.1 493 57.4
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 1.0e-149 534.3 491 57.0
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 1.4e-149 533.9 489 58.1
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 1.5e-148 530.4 498 56.8
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 2.6e-148 529.6 493 54.6
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 2.6e-148 529.6 492 56.5
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 9.7e-148 527.7 439 60.1
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 1.7e-147 526.9 494 57.3
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 3.7e-147 525.8 464 59.3
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 6.3e-147 525.0 485 57.3
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 6.3e-147 525.0 501 56.1
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 7.0e-146 521.5 487 58.3
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 4.5e-145 518.8 488 53.3
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 5.9e-145 518.5 494 57.1
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 1.3e-144 517.3 568 51.8
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 2.2e-144 516.5 485 57.3
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 1.9e-143 513.5 486 54.3
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 2.7e-142 509.6 497 55.3
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 8.0e-142 508.1 407 59.7
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 8.0e-142 508.1 490 54.1
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 5.2e-141 505.4 489 55.6
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 6.8e-141 505.0 488 53.3
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 8.8e-141 504.6 498 54.0
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 2.0e-140 503.4 496 53.2
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 3.4e-140 502.7 496 53.2
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 9.8e-140 501.1 479 54.9
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 1.7e-139 500.4 488 54.5
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 4.8e-139 498.8 478 53.1
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 8.3e-139 498.0 486 53.3
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 1.8e-138 496.9 487 53.6
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 3.1e-138 496.1 492 52.8
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 1.2e-137 494.2 489 53.8
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 5.9e-137 491.9 495 52.9
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 5.5e-135 485.3 490 52.9
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 2.1e-134 483.4 496 52.4
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 4.7e-134 482.3 490 52.4
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 8.0e-134 481.5 509 51.7
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 4.0e-133 479.2 489 50.9
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 6.8e-133 478.4 516 50.0
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 6.8e-133 478.4 433 57.7
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 5.4e-130 468.8 491 51.3
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 5.4e-130 468.8 491 51.3
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 7.0e-130 468.4 486 52.3
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 5.6e-127 458.8 386 60.6
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 1.6e-126 457.2 366 60.9
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 8.9e-125 451.4 406 55.7
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.2e-124 451.1 545 49.2
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 1.5e-124 450.7 495 50.7
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 2.6e-124 449.9 494 49.4
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 2.6e-124 449.9 500 48.4
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 5.7e-124 448.7 496 51.2
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 6.4e-123 445.3 396 58.3
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 1.3e-120 437.6 526 46.8
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 4.9e-115 419.1 491 48.5
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 8.9e-109 398.3 356 57.9
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 1.2e-108 397.9 362 57.7
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 1.5e-108 397.5 396 53.3
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 7.5e-108 395.2 491 43.8
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 8.3e-107 391.7 491 43.2
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 8.4e-99 365.2 480 42.5
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 7.6e-92 342.0 395 46.6
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 8.4e-91 338.6 486 41.4
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.3e-88 331.3 497 42.1
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.7e-88 330.9 353 51.0
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 8.1e-86 322.0 251 64.9
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 3.2e-74 283.5 503 35.8
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 1.7e-67 261.2 428 36.9
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 8.7e-64 248.8 236 56.8
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 2.1e-62 244.2 282 47.2
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.4e-58 231.5 270 45.2
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 8.7e-56 222.2 197 58.4
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 1.2e-52 211.8 170 57.6
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.3e-51 208.4 415 34.2
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 3.8e-51 206.8 270 41.9
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 1.4e-50 204.9 327 40.4
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 1.8e-45 188.0 279 40.9
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 2.3e-40 171.0 134 63.4
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 3.0e-40 170.6 233 42.9
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 5.2e-40 169.9 136 62.5
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 1.1e-37 162.2 276 36.6
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 1.1e-37 162.2 108 67.6
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 4.7e-33 146.7 169 46.2
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 6.1e-33 146.4 402 27.9
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 6.7e-32 142.9 235 39.1
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 3.5e-28 130.6 133 52.6
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 5.5e-26 123.2 142 49.3
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 5.2e-24 116.7 136 47.8
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 3.4e-23 114.0 165 47.3
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 1.6e-20 105.1 109 53.2
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 6.6e-11 73.2 106 35.8
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 6.8e-08 63.2 109 40.4
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 3.7e-06 57.4 153 25.5


User provided reference genes

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