Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 5.4e-58 227.6 131 100.0
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 1.3e-38 163.3 104 82.7
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 2.0e-36 156.0 102 81.4
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 5.6e-23 111.3 103 64.1
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 1.8e-21 106.3 99 59.6
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 5.8e-20 101.3 107 55.1
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 3.2e-18 95.5 106 52.8
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 7.1e-18 94.4 97 57.7
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 1.6e-17 93.2 95 57.9
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 3.5e-17 92.0 100 54.0
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 4.6e-17 91.7 106 49.1
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 7.9e-17 90.9 122 46.7
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 1.0e-16 90.5 89 55.1
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 1.0e-16 90.5 92 53.3
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 1.3e-16 90.1 93 53.8
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 1.3e-16 90.1 82 58.5
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 1.8e-16 89.7 99 54.5
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 1.8e-16 89.7 108 53.7
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 2.3e-16 89.4 89 55.1
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 2.3e-16 89.4 82 59.8
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 2.3e-16 89.4 78 57.7
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 3.9e-16 88.6 101 52.5
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 5.1e-16 88.2 92 52.2
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 5.1e-16 88.2 78 56.4
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 5.1e-16 88.2 95 49.5
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 6.7e-16 87.8 93 51.6
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 6.7e-16 87.8 93 51.6
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 6.7e-16 87.8 93 51.6
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 8.7e-16 87.4 82 58.5
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 8.7e-16 87.4 89 53.9
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 8.7e-16 87.4 89 53.9
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 1.1e-15 87.0 92 53.3
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 1.1e-15 87.0 106 50.9
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 1.1e-15 87.0 94 51.1
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 1.5e-15 86.7 82 58.5
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 2.5e-15 85.9 99 50.5
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 3.3e-15 85.5 78 57.7
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 4.3e-15 85.1 89 55.1
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 4.3e-15 85.1 79 55.7
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 4.3e-15 85.1 122 47.5
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 9.6e-15 84.0 100 51.0
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 9.6e-15 84.0 101 48.5
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 1.3e-14 83.6 96 53.1
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 1.3e-14 83.6 55 74.5
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 1.6e-14 83.2 84 51.2
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 1.6e-14 83.2 102 50.0
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.6e-14 83.2 79 54.4
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 3.7e-14 82.0 93 47.3
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 3.7e-14 82.0 57 70.2
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 3.7e-14 82.0 126 44.4
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 4.8e-14 81.6 86 52.3
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 4.8e-14 81.6 65 64.6
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 6.3e-14 81.3 87 50.6
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 8.2e-14 80.9 98 51.0
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 8.2e-14 80.9 102 50.0
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 8.2e-14 80.9 105 51.4
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 1.1e-13 80.5 93 46.2
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 1.1e-13 80.5 107 47.7
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 1.1e-13 80.5 100 50.0
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 1.1e-13 80.5 93 50.5
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 1.4e-13 80.1 82 54.9
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 1.8e-13 79.7 100 51.0
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 2.4e-13 79.3 68 60.3
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 3.1e-13 79.0 75 57.3
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 3.1e-13 79.0 101 49.5
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 3.1e-13 79.0 101 49.5
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 3.1e-13 79.0 49 73.5
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 4.1e-13 78.6 56 67.9
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 5.3e-13 78.2 105 47.6
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 5.3e-13 78.2 95 44.2
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 9.0e-13 77.4 99 48.5
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 9.0e-13 77.4 67 61.2
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 1.2e-12 77.0 85 52.9
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 1.2e-12 77.0 54 70.4
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 2.6e-12 75.9 92 47.8
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 2.6e-12 75.9 74 58.1
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 2.6e-12 75.9 74 58.1
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 2.6e-12 75.9 65 60.0
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 3.4e-12 75.5 99 46.5
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 4.5e-12 75.1 72 55.6
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 5.9e-12 74.7 96 49.0
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 5.9e-12 74.7 104 45.2
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 1.0e-11 73.9 99 45.5
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 1.3e-11 73.6 89 50.6
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 1.3e-11 73.6 89 50.6
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 1.3e-11 73.6 105 45.7
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 1.3e-11 73.6 65 61.5
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 1.3e-11 73.6 89 53.9
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 1.7e-11 73.2 70 57.1
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 2.2e-11 72.8 68 57.4
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 2.9e-11 72.4 81 54.3
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.9e-11 72.4 99 44.4
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 3.8e-11 72.0 64 59.4
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 3.8e-11 72.0 103 46.6
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 8.4e-11 70.9 86 47.7
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 1.1e-10 70.5 54 61.1
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 4.2e-10 68.6 98 43.9
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 7.2e-10 67.8 63 50.8
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 9.3e-10 67.4 57 57.9
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 1.6e-09 66.6 57 59.6
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 2.1e-09 66.2 57 57.9
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 1.3e-08 63.5 95 44.2
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 5.1e-08 61.6 55 58.2
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 1.5e-07 60.1 49 57.1
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 1.9e-07 59.7 41 70.7
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 7.4e-07 57.8 95 44.2
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 9.7e-07 57.4 81 46.9
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 6.3e-06 54.7 81 45.7


User provided reference genes

Program Settings