Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 0.0e+00 1343.6 771 100.0
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 2.4e-270 935.6 782 71.6
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 2.6e-253 879.0 778 68.8
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 2.0e-237 826.2 811 66.7
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 4.7e-194 682.2 778 56.3
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 2.1e-178 630.2 784 55.1
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 6.2e-170 602.1 793 52.5
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 1.2e-168 597.8 796 52.1
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 3.3e-163 579.7 795 51.3
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 2.8e-162 576.6 806 53.5
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 2.0e-144 517.3 826 47.5
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 3.4e-144 516.5 806 49.4
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 2.4e-137 493.8 834 48.3
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 6.1e-133 479.2 720 48.9
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 1.7e-130 471.1 495 58.8
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 6.9e-129 465.7 812 44.1
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 1.4e-121 441.4 752 45.9
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 3.1e-121 440.3 615 48.9
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 7.0e-121 439.1 805 43.7
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 1.2e-120 438.3 846 41.8
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.4e-118 431.4 614 47.9
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 4.7e-117 426.4 845 41.3
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 6.7e-116 422.5 749 44.6
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 3.3e-115 420.2 860 40.8
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 3.3e-115 420.2 813 41.0
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 2.8e-114 417.2 808 39.7
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 4.8e-114 416.4 816 40.0
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 8.2e-114 415.6 784 42.5
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 1.4e-113 414.8 810 43.7
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 2.4e-113 414.1 811 39.7
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 4.5e-112 409.8 787 40.9
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 3.8e-111 406.8 853 38.8
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 1.6e-109 401.4 830 40.2
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 1.4e-108 398.3 813 42.7
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 6.7e-108 396.0 795 42.5
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 8.8e-108 395.6 742 42.3
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 2.0e-107 394.4 798 41.6
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 2.6e-107 394.0 796 42.8
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 1.1e-105 388.7 638 42.9
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 1.4e-105 388.3 690 42.3
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 2.4e-105 387.5 854 40.2
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 8.5e-103 379.0 874 37.6
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 5.5e-102 376.3 641 42.7
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 7.2e-102 375.9 864 38.7
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 4.7e-101 373.2 803 39.9
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 8.0e-101 372.5 828 40.1
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 3.0e-100 370.5 803 41.3
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 6.8e-100 369.4 813 37.8
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 4.4e-99 366.7 862 36.4
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 9.8e-99 365.5 837 36.8
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 5.4e-97 359.8 816 37.7
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 1.6e-96 358.2 861 36.2
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 7.7e-96 355.9 808 38.4
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 2.3e-95 354.4 804 38.6
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 5.0e-95 353.2 825 38.5
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 5.0e-95 353.2 829 37.2
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 8.6e-95 352.4 617 42.9
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.9e-94 351.3 829 36.8
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 1.2e-91 342.0 775 37.9
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 3.4e-91 340.5 836 39.7
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 4.1e-89 333.6 612 46.1
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 8.6e-87 325.9 783 37.3
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 3.3e-86 323.9 861 34.8
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 4.0e-84 317.0 537 45.6
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 6.8e-84 316.2 726 37.1
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 2.2e-82 311.2 611 41.4
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 1.4e-81 308.5 671 41.9
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 1.9e-81 308.1 783 36.3
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 2.4e-81 307.8 804 36.1
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 4.1e-81 307.0 830 36.6
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 7.0e-81 306.2 629 41.2
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 8.6e-79 299.3 818 36.1
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 3.3e-78 297.4 828 35.0
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 4.0e-76 290.4 738 34.7
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 2.7e-72 277.7 290 58.3
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 1.9e-70 271.6 646 37.9
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 3.3e-70 270.8 764 36.1
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 3.1e-68 264.2 582 40.2
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 3.1e-68 264.2 582 40.2
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 1.2e-67 262.3 657 36.4
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 1.8e-60 238.4 610 35.4
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 7.6e-59 233.0 659 37.8
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 2.9e-58 231.1 852 34.0
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 3.8e-58 230.7 798 30.1
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 1.1e-57 229.2 803 30.4
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 1.4e-57 228.8 676 33.1
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 3.2e-57 227.6 834 34.2
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 3.9e-55 220.7 762 33.7
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 5.1e-55 220.3 660 35.0
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 3.6e-53 214.2 661 34.3
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 8.1e-53 213.0 399 38.3
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 1.8e-52 211.8 846 32.5
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 1.2e-51 209.1 858 31.4
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 2.6e-51 208.0 846 31.4
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 5.8e-51 206.8 623 35.5
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 5.8e-51 206.8 623 35.5
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 1.3e-50 205.7 679 34.0
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 6.4e-50 203.4 626 35.5
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 5.4e-49 200.3 816 28.6
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 9.3e-49 199.5 530 34.5
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 3.3e-46 191.0 608 31.7
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 4.9e-42 177.2 645 33.0
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 5.1e-39 167.2 600 32.2
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 8.1e-37 159.8 569 32.7
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 3.2e-33 147.9 710 29.9
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 1.5e-27 129.0 431 36.0
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 1.1e-25 122.9 600 28.8
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 3.2e-25 121.3 200 43.5
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 5.1e-23 114.0 511 28.2
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 3.7e-21 107.8 673 26.2
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.1e-20 104.8 610 25.7
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.1e-20 104.8 610 25.7
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 5.1e-15 87.4 175 38.3
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 4.1e-12 77.8 152 41.4
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 1.0e-07 63.2 88 42.0


User provided reference genes

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