Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 3830.8 1965 100.0
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 3415.6 1979 88.7
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 3363.9 1978 87.3
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 3316.6 1980 85.9
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 3038.1 1981 79.4
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 3035.7 1994 78.8
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2988.4 1982 77.1
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2943.7 1975 76.8
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2936.4 1995 75.8
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2908.2 1989 75.7
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2795.8 2126 69.8
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2723.3 1964 73.0
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2415.6 1999 64.7
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2372.0 2017 63.8
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2360.9 2001 62.8
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2305.4 1916 64.5
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2276.1 2006 60.9
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2268.0 2014 62.0
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2267.7 2011 60.9
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2266.5 1998 60.7
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2265.7 2015 61.8
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2263.4 1991 61.6
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2261.1 1949 61.8
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2227.6 2019 59.7
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2220.7 1995 60.5
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2219.1 1914 62.5
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2202.6 2018 60.0
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2194.5 1921 61.7
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2185.6 2006 58.9
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2182.1 2089 57.1
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2179.8 1997 60.6
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2139.0 1946 60.0
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2137.5 2008 58.2
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2130.1 1978 58.5
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2128.2 1912 59.6
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2124.0 2083 55.8
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2121.3 1871 60.8
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2103.2 2025 56.9
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2094.7 1907 60.6
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2084.3 1957 58.3
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2067.7 1962 57.8
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2038.5 1975 56.3
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2031.5 1928 57.2
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2028.1 1906 57.0
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2004.2 1919 57.1
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1974.1 1966 55.5
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1973.7 1972 55.3
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1972.6 2080 53.6
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1972.2 2029 54.5
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1972.2 1863 59.3
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1959.1 2058 53.3
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1949.1 1997 55.1
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1943.7 2016 54.4
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1941.0 1941 54.9
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1932.1 1914 55.9
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1927.1 1921 55.9
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1924.1 1961 54.4
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1910.2 1915 55.6
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1905.2 1920 54.9
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1903.6 1915 55.5
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1898.2 1984 52.8
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1898.2 1910 55.4
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1896.7 1920 55.0
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1896.3 1892 54.9
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1894.8 1926 54.1
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1890.2 1917 55.1
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1884.4 1901 54.7
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1877.8 1902 54.5
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1875.1 1946 54.4
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1875.1 1946 54.3
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1873.6 2133 50.2
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1869.4 1961 53.3
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1846.2 1924 54.4
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1845.9 1916 54.2
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1843.6 1934 54.2
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1841.6 1896 53.8
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1835.1 1908 54.2
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1820.8 1930 53.5
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1791.2 1937 52.5
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1775.8 1904 51.7
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1717.6 2152 47.7
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1710.7 1908 51.8
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1587.8 1545 56.6
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1528.1 1336 62.4
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1493.8 1623 52.4
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1460.7 1782 47.6
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1421.4 1960 44.1
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1247.6 1058 62.7
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1169.5 1946 38.6
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1141.3 2164 36.5
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1113.6 741 80.4
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1112.4 2177 35.6
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 4.0e-306 1055.8 2091 34.5
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.7e-286 989.9 724 74.3
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 3.4e-265 919.8 754 65.3
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 8.5e-232 808.9 1391 38.7
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 9.1e-226 788.9 774 57.6
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.1e-218 765.4 1185 40.3
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 1.7e-216 758.1 685 59.3
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.8e-205 721.5 760 55.1
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 4.0e-205 720.3 2105 29.5
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 3.8e-179 634.0 802 47.9
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 8.6e-99 367.1 400 48.8
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 5.7e-95 354.4 220 82.7
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 9.8e-95 353.6 372 50.3
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 2.0e-84 319.3 189 83.1
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 2.1e-81 309.3 491 40.5
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.4e-64 252.7 217 58.1
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 6.9e-56 224.6 124 87.1
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.3e-54 220.3 255 47.1
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.2e-52 213.8 313 43.5
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 8.7e-51 207.6 236 47.0
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 1.0e-43 184.1 264 44.3
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 5.5e-37 161.8 198 46.0
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 4.0e-32 145.6 122 65.6
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 1.5e-31 143.7 80 90.0
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.7e-30 140.2 142 50.7
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 6.7e-27 128.3 94 70.2
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 6.3e-25 121.7 147 49.7
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 1.2e-20 107.5 112 51.8
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 1.4e-19 104.0 87 69.0
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 4.3e-18 99.0 110 51.8
Psat6g116480 Pisum sativum HOM05D006132 ORTHO05D007305 1.3e-17 97.4 91 59.3
Psat2g121560 Pisum sativum HOM05D006816 ORTHO05D008666 4.5e-15 89.0 73 61.6
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 7.7e-15 88.2 74 62.2
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 1.0e-14 87.8 61 65.6
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 1.3e-14 87.4 68 61.8
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.3e-11 76.6 83 45.8
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 6.3e-09 68.6 307 25.1
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 4.5e-07 62.4 70 52.9


User provided reference genes

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