Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 2.7e-51 204.9 96 100.0
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 5.8e-33 144.1 86 81.4
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 1.9e-31 139.0 86 76.7
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 2.3e-29 132.1 86 74.4
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 1.5e-28 129.4 86 72.1
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 4.3e-28 127.9 86 70.9
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 9.5e-28 126.7 86 70.9
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 1.2e-27 126.3 86 69.8
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 1.2e-27 126.3 72 81.9
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 1.1e-26 123.2 87 70.1
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 3.4e-25 118.2 72 79.2
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 5.8e-25 117.5 87 63.2
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 7.5e-25 117.1 72 77.8
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 1.7e-24 115.9 72 75.0
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 1.7e-24 115.9 86 61.6
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 2.2e-24 115.5 78 67.9
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 2.2e-24 115.5 78 67.9
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 6.4e-24 114.0 86 65.1
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 6.4e-24 114.0 72 73.6
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 6.4e-24 114.0 86 59.3
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 6.4e-24 114.0 75 72.0
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 1.1e-23 113.2 72 72.2
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 1.4e-23 112.8 72 70.8
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 1.9e-23 112.5 78 65.4
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 1.9e-23 112.5 78 66.7
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 1.9e-23 112.5 75 64.0
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 2.4e-23 112.1 75 68.0
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 3.2e-23 111.7 78 66.7
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 3.2e-23 111.7 72 69.4
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 4.1e-23 111.3 78 66.7
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 4.1e-23 111.3 72 73.6
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 7.1e-23 110.5 86 58.1
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 9.2e-23 110.2 75 66.7
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 9.2e-23 110.2 75 66.7
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 1.2e-22 109.8 72 72.2
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 1.2e-22 109.8 72 68.1
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 1.6e-22 109.4 75 60.0
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 2.1e-22 109.0 72 68.1
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 2.1e-22 109.0 72 70.8
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 2.1e-22 109.0 72 68.1
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 2.1e-22 109.0 65 73.8
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 2.7e-22 108.6 69 69.6
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 2.7e-22 108.6 72 69.4
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 3.5e-22 108.2 72 72.2
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 3.5e-22 108.2 86 58.1
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 3.5e-22 108.2 86 58.1
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 4.6e-22 107.8 72 69.4
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 4.6e-22 107.8 70 72.9
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 6.0e-22 107.5 75 65.3
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 6.0e-22 107.5 72 66.7
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 6.0e-22 107.5 66 72.7
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 7.8e-22 107.1 73 67.1
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 7.8e-22 107.1 86 55.8
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 7.8e-22 107.1 75 64.0
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 1.0e-21 106.7 86 58.1
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 1.3e-21 106.3 86 57.0
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 1.7e-21 105.9 78 62.8
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 3.0e-21 105.1 72 63.9
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 3.9e-21 104.8 78 62.8
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 3.9e-21 104.8 66 69.7
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 3.9e-21 104.8 78 59.0
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 5.1e-21 104.4 78 59.0
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 5.1e-21 104.4 86 57.0
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 5.1e-21 104.4 69 71.0
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 5.1e-21 104.4 63 73.0
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 6.6e-21 104.0 76 64.5
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 6.6e-21 104.0 78 61.5
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 8.6e-21 103.6 78 61.5
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.1e-20 103.2 78 59.0
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 1.1e-20 103.2 78 59.0
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 1.5e-20 102.8 78 60.3
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 1.5e-20 102.8 78 60.3
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 1.5e-20 102.8 72 62.5
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.5e-20 102.8 69 69.6
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 1.5e-20 102.8 78 60.3
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 2.5e-20 102.1 78 60.3
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 2.5e-20 102.1 69 66.7
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 3.3e-20 101.7 78 60.3
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 3.3e-20 101.7 78 60.3
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 3.3e-20 101.7 78 60.3
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 4.3e-20 101.3 78 57.7
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 4.3e-20 101.3 72 61.1
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 5.6e-20 100.9 72 63.9
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 7.3e-20 100.5 78 57.7
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 7.3e-20 100.5 67 67.2
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 2.1e-19 99.0 69 60.9
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 2.8e-19 98.6 67 65.7
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 4.7e-19 97.8 78 57.7
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 6.2e-19 97.4 72 59.7
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 1.4e-18 96.3 87 51.7
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 1.8e-18 95.9 68 60.3
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 1.8e-18 95.9 78 57.7
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 1.8e-18 95.9 62 67.7
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 4.0e-18 94.7 60 66.7
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 5.2e-18 94.4 67 64.2
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 1.5e-17 92.8 70 55.7
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 2.0e-17 92.4 78 55.1
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 1.3e-16 89.7 81 48.1
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 3.8e-08 61.6 44 52.3
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 3.8e-08 61.6 38 65.8
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 6.4e-08 60.8 67 34.3
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 9.3e-07 57.0 38 63.2


User provided reference genes

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