Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 5.1e-233 810.8 444 100.0
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.4e-195 686.4 413 83.8
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 2.4e-182 642.5 427 78.0
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.9e-179 632.9 422 78.0
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 2.0e-168 596.3 417 73.4
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 5.7e-168 594.7 418 73.4
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.6e-165 586.6 421 71.7
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 6.5e-164 581.3 419 72.3
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 2.4e-158 562.8 470 64.3
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.2e-152 543.9 418 67.7
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 7.0e-150 534.6 422 68.0
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 7.7e-149 531.2 422 68.2
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 2.3e-148 529.6 414 69.3
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.6e-96 356.7 433 49.9
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 4.6e-93 345.9 438 47.5
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 2.5e-91 340.1 419 49.4
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 2.8e-90 336.7 384 50.3
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.3e-87 327.8 367 53.1
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 2.2e-87 327.0 382 50.5
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 6.5e-87 325.5 372 52.4
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.1e-86 324.7 367 52.9
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.9e-86 323.9 323 57.3
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 3.2e-86 323.2 353 52.7
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.2e-85 321.2 384 50.5
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 3.5e-85 319.7 341 53.1
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 4.6e-85 319.3 347 53.9
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 1.0e-84 318.2 373 51.7
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.0e-84 318.2 373 45.0
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 6.7e-84 315.5 336 54.8
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 6.7e-84 315.5 391 49.1
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 1.5e-83 314.3 415 46.7
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 4.8e-82 309.3 405 46.4
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.5e-80 304.3 405 46.4
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 2.9e-79 300.1 330 53.3
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 3.8e-79 299.7 346 48.0
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.1e-78 298.1 352 50.6
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.1e-78 298.1 308 54.5
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 1.9e-78 297.4 327 52.3
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.5e-78 297.0 333 53.8
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 2.5e-78 297.0 330 52.1
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 3.2e-78 296.6 246 56.5
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 4.2e-78 296.2 333 53.5
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 4.2e-78 296.2 330 51.8
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 4.2e-78 296.2 335 51.0
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 1.2e-77 294.7 330 52.4
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 2.1e-77 293.9 327 51.7
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 2.7e-77 293.5 320 54.1
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.6e-77 292.7 325 52.3
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.6e-77 292.7 325 52.3
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 6.1e-77 292.4 333 49.2
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 6.1e-77 292.4 331 51.4
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 7.9e-77 292.0 328 51.5
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 7.9e-77 292.0 322 53.4
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 1.3e-76 291.2 308 54.5
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 1.8e-76 290.8 315 53.7
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.8e-76 290.8 325 52.0
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 3.9e-76 289.7 331 52.0
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 3.9e-76 289.7 333 52.0
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 6.7e-76 288.9 332 53.0
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.1e-75 288.1 322 50.6
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.1e-75 288.1 324 51.2
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 1.1e-75 288.1 317 53.3
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 1.1e-75 288.1 325 52.6
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.1e-75 288.1 328 52.1
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 1.5e-75 287.7 325 50.5
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.5e-75 287.7 409 45.0
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.9e-75 287.3 331 51.4
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 2.5e-75 287.0 332 50.9
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 2.5e-75 287.0 327 51.1
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 3.3e-75 286.6 321 52.0
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 5.7e-75 285.8 322 53.1
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 5.7e-75 285.8 349 49.0
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 7.4e-75 285.4 321 51.1
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 7.4e-75 285.4 305 54.4
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 7.4e-75 285.4 301 53.2
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 7.4e-75 285.4 327 51.7
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 9.7e-75 285.0 299 53.5
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 9.7e-75 285.0 329 50.2
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.3e-74 284.6 325 50.8
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 1.6e-74 284.3 324 50.0
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.2e-74 283.9 326 51.5
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 6.3e-74 282.3 317 44.8
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 8.2e-74 282.0 304 51.3
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 8.2e-74 282.0 346 44.2
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 8.2e-74 282.0 313 49.2
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.1e-73 281.6 313 52.7
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.1e-73 281.6 319 48.6
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 2.4e-73 280.4 317 47.0
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 2.4e-73 280.4 325 50.5
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 3.1e-73 280.0 369 47.2
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 3.1e-73 280.0 332 50.3
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 9.0e-73 278.5 302 50.7
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.2e-72 278.1 329 48.3
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.5e-72 277.7 322 50.0
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 2.0e-72 277.3 325 48.6
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.0e-72 277.3 303 51.5
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.0e-72 277.3 338 48.2
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 2.0e-72 277.3 333 49.8
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 2.6e-72 276.9 327 49.5
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 2.6e-72 276.9 333 49.8
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 3.4e-72 276.6 303 51.5
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 7.7e-72 275.4 328 47.9
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 1.3e-71 274.6 332 49.1
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 3.8e-71 273.1 296 47.0
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 5.0e-71 272.7 306 52.6
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 8.5e-71 271.9 328 47.9
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.1e-70 271.6 340 47.9
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 5.5e-70 269.2 402 38.6
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 7.2e-70 268.9 318 49.4
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 7.2e-70 268.9 314 50.3
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 9.4e-70 268.5 307 48.9
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.2e-69 268.1 329 47.7
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.6e-69 267.7 329 49.8
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 2.1e-69 267.3 329 50.2
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 2.1e-69 267.3 317 44.2
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 2.7e-69 266.9 189 62.4
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 4.6e-69 266.2 318 50.3
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 4.6e-69 266.2 304 50.7
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 4.6e-69 266.2 310 44.8
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 1.8e-68 264.2 304 49.7
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 1.8e-68 264.2 325 49.8
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.8e-68 264.2 385 44.4
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 2.3e-68 263.8 345 46.1
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 6.7e-68 262.3 326 47.9
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.5e-67 261.2 305 48.5
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.5e-67 260.4 302 51.0
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 9.7e-67 258.5 298 49.0
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 9.7e-67 258.5 249 51.4
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 1.3e-66 258.1 298 49.3
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 1.7e-66 257.7 303 49.2
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 4.8e-66 256.1 302 50.0
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 6.3e-66 255.8 298 49.0
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 6.3e-66 255.8 298 49.0
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.4e-65 254.6 299 48.8
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 9.1e-65 251.9 303 47.9
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.2e-64 251.5 222 53.2
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 2.0e-64 250.8 297 49.5
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 5.9e-64 249.2 299 47.5
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 7.7e-64 248.8 328 39.3
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 2.5e-62 243.8 291 45.7
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.0e-60 238.4 299 48.8
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 3.0e-60 236.9 301 49.2
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.5e-59 234.6 296 49.0
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 2.8e-58 230.3 309 37.9
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.1e-57 228.4 264 46.6
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.4e-57 228.0 284 50.4
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 1.8e-57 227.6 321 43.0
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 1.2e-56 224.9 303 45.5
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.2e-56 224.9 364 43.1
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.2e-55 220.7 302 45.4
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.9e-55 220.3 299 43.5
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 1.8e-52 211.1 185 50.3
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 8.8e-52 208.8 196 52.0
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.6e-45 188.0 271 45.8
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.1e-41 173.7 310 42.9
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 4.1e-41 173.3 291 40.5
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 2.7e-40 170.6 177 42.4
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.9e-40 169.5 257 38.1
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 7.7e-40 169.1 175 48.6
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 8.5e-39 165.6 302 34.1
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.2e-37 161.8 317 34.7
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.8e-33 147.9 96 67.7
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.2e-25 120.6 71 69.0
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 2.9e-23 114.0 170 36.5
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 6.6e-23 112.8 71 64.8
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.3e-10 72.0 38 73.7
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 6.4e-10 69.7 37 73.0


User provided reference genes

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