Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12280 Trifolium pratense HOM05D002953 ORTHO05D003249 4.1e-93 344.7 179 100.0
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 3.4e-71 271.9 169 82.8
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 2.4e-69 265.8 168 81.0
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 5.3e-48 194.9 173 60.7
Glyma.06G199700 Glycine max HOM05D002953 ORTHO05D003249 4.8e-41 171.8 170 55.3
Glyma.17G076300 Glycine max HOM05D002953 ORTHO05D003249 3.9e-35 152.1 210 45.7
Glyma.04G164800 Glycine max HOM05D002953 ORTHO05D003249 5.3e-32 141.7 146 53.4
Glyma.05G023400 Glycine max HOM05D002953 ORTHO05D003249 5.9e-31 138.3 195 44.6
arahy.Tifrunner.gnm1.ann1.90GC30 Arachis hypogaea HOM05D002953 ORTHO05D003249 5.5e-29 131.7 198 42.4
Lalb_Chr13g0302991 Lupinus albus HOM05D002953 ORTHO05D003249 1.2e-23 114.0 193 39.9
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 7.7e-23 111.3 155 45.8
arahy.Tifrunner.gnm1.ann1.52HBJM Arachis hypogaea HOM05D002953 ORTHO05D003249 3.2e-21 105.9 159 42.8
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 2.0e-18 96.7 165 37.6
Atru.chr9.285 Acer truncatum HOM05D002953 ORTHO05D003249 7.0e-16 88.2 158 39.2
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 1.3e-14 84.0 156 34.6
Ciclev10024374m.g Citrus clementina HOM05D002953 ORTHO05D003249 2.2e-14 83.2 159 37.7
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 6.5e-14 81.6 149 32.2
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 8.5e-14 81.3 153 37.3
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 5.5e-13 78.6 153 33.3
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 7.2e-13 78.2 153 33.3
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 9.4e-13 77.8 168 33.3
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 1.2e-12 77.4 147 32.0
FAN13G1454 Fragaria x ananassa HOM05D000627 ORTHO05D000365 2.1e-12 76.6 174 32.8
FAN18G4303 Fragaria x ananassa HOM05D000627 ORTHO05D000365 2.1e-12 76.6 174 32.8
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 3.6e-12 75.9 174 32.8
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 4.7e-12 75.5 166 36.1
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 6.1e-12 75.1 167 34.7
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 6.1e-12 75.1 184 33.2
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.0e-11 74.3 163 35.0
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 1.8e-11 73.6 162 33.3
Phvul.003G186800 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 1.8e-11 73.6 123 41.5
Oeu032216.1 Olea europaea HOM05D002953 ORTHO05D003249 2.3e-11 73.2 152 34.2
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 3.0e-11 72.8 169 32.0
FAN08G1545 Fragaria x ananassa HOM05D002953 ORTHO05D000365 6.8e-11 71.6 174 31.6
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 1.5e-10 70.5 175 29.1
CARHR275030 Cardamine hirsuta HOM05D002953 ORTHO05D003249 1.5e-10 70.5 147 31.3
TWI81G0838 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 1.5e-10 70.5 168 34.5
Gohir.A12G180300 Gossypium hirsutum HOM05D002953 ORTHO05D003249 4.4e-10 68.9 158 33.5
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 5.7e-10 68.6 167 33.5
Eucgr.B00564 Eucalyptus grandis HOM05D002953 ORTHO05D003249 5.7e-10 68.6 165 33.9
Gohir.D12G183000 Gossypium hirsutum HOM05D002953 ORTHO05D003249 5.7e-10 68.6 158 34.2
Gorai.008G196300 Gossypium raimondii HOM05D002953 ORTHO05D003249 5.7e-10 68.6 158 34.2
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 5.7e-10 68.6 156 31.4
Sp2g24510 Schrenkiella parvula HOM05D002953 ORTHO05D003249 7.5e-10 68.2 152 32.2
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 9.8e-10 67.8 156 33.3
Sopen06g026890 Solanum pennellii HOM05D002953 ORTHO05D003249 9.8e-10 67.8 147 36.1
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 1.3e-09 67.4 168 33.9
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 1.3e-09 67.4 147 35.4
Sed0013431 Sechium edule HOM05D002953 ORTHO05D003249 1.7e-09 67.0 160 31.2
Rhsim12G0152900 Rhododendron simsii HOM05D002953 ORTHO05D003249 4.9e-09 65.5 154 30.5
Rhsim12G0152800 Rhododendron simsii HOM05D002953 ORTHO05D003249 6.3e-09 65.1 155 29.7
HanXRQChr02g0035641 Helianthus annuus HOM05D002953 ORTHO05D003249 1.4e-08 63.9 181 33.7
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 1.4e-08 63.9 162 30.2
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 1.4e-08 63.9 182 29.7
AT5G61280 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 3.1e-08 62.8 156 28.8
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 3.1e-08 62.8 199 28.6
AL8G37940 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 4.1e-08 62.4 153 32.7
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 4.1e-08 62.4 147 34.7
EL10Ac5g11089 Beta vulgaris HOM05D002953 ORTHO05D003249 9.1e-08 61.2 156 30.1
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 9.1e-08 61.2 165 32.1
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 9.1e-08 61.2 160 28.1
Ah.11g048070 Amaranthus hybridus HOM05D002953 ORTHO05D003249 2.0e-07 60.1 158 32.9
Peaxi162Scf00013g00538 Petunia axillaris HOM05D002953 ORTHO05D003249 2.0e-07 60.1 151 27.8
MD14G1208100 Malus domestica HOM05D002953 ORTHO05D003249 3.5e-07 59.3 133 34.6
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 4.5e-07 58.9 170 30.0
ECA232G4309 Erigeron canadensis HOM05D002953 ORTHO05D003249 5.9e-07 58.5 180 30.0
BcaC06g33224 Brassica carinata HOM05D002953 ORTHO05D000365 1.7e-06 57.0 152 30.9
BcaC06g33225 Brassica carinata HOM05D002953 ORTHO05D003249 1.7e-06 57.0 152 30.9
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 2.9e-06 56.2 150 32.7
Migut.I00340 Erythranthe guttata HOM05D002953 ORTHO05D003249 3.8e-06 55.8 58 50.0
Dinv38775 Davidia involucrata HOM05D000630 ORTHO05D000365 5.0e-06 55.5 155 32.9
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 5.0e-06 55.5 153 29.4
Nitab4.5_0001688g0010 Nicotiana tabacum HOM05D002953 ORTHO05D003249 8.6e-06 54.7 147 32.0


User provided reference genes

Program Settings