Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12268 Trifolium pratense HOM05D021848 ORTHO05D018477 6.4e-158 560.8 313 100.0
Medtr3g028570 Medicago truncatula HOM05D021848 ORTHO05D018477 2.9e-81 306.2 328 56.1
Medtr4g065620 Medicago truncatula HOM05D021848 ORTHO05D018477 2.5e-69 266.5 298 53.7
TPR.G11204 Trifolium pratense HOM05D021848 ORTHO05D018477 3.3e-45 186.4 125 76.8
Lj3g0003889 Lotus japonicus HOM05D000336 ORTHO05D018477 4.3e-29 132.9 299 37.5
arahy.Tifrunner.gnm1.ann1.PF0H12 Arachis hypogaea HOM05D021848 ORTHO05D018477 2.2e-25 120.6 310 32.6
arahy.Tifrunner.gnm1.ann1.UZ271C Arachis hypogaea HOM05D002216 ORTHO05D002011 4.6e-23 112.8 282 35.5
Lj3g0009213 Lotus japonicus HOM05D000336 ORTHO05D018477 4.3e-21 106.3 282 29.4
arahy.Tifrunner.gnm1.ann1.7Q90JW Arachis hypogaea HOM05D000336 ORTHO05D018477 5.0e-17 92.8 114 47.4
MD09G1193800 Malus domestica HOM05D000336 ORTHO05D015159 2.2e-12 77.4 322 25.8
MD09G1193700 Malus domestica HOM05D000336 ORTHO05D015159 8.2e-12 75.5 332 26.2
Prupe.8G051500 Prunus persica HOM05D000336 ORTHO05D015159 1.4e-11 74.7 270 25.6
Prupe.8G051100 Prunus persica HOM05D000336 ORTHO05D015159 3.1e-11 73.6 270 24.4
Prupe.8G050900 Prunus persica HOM05D000336 ORTHO05D015159 4.1e-11 73.2 258 25.2
Ca_24126_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 1.2e-10 71.6 112 42.0
Prupe.3G132800 Prunus persica HOM05D000336 ORTHO05D015159 1.2e-10 71.6 246 29.3
Gohir.A05G151900 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.5e-10 71.2 108 37.0
Gohir.D05G154300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.5e-10 71.2 108 37.0
Gorai.009G158600 Gossypium raimondii HOM05D000336 ORTHO05D000593 1.5e-10 71.2 108 37.0
GSVIVG01021322001 Vitis vinifera HOM05D000336 ORTHO05D000593 1.5e-10 71.2 108 37.0
Ca_24128_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 7.7e-10 68.9 112 39.3
Ca_24129_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 7.7e-10 68.9 112 39.3
Aqoxy4G00167 Aquilegia oxysepala HOM05D000336 ORTHO05D000593 1.0e-09 68.6 108 38.0
Ca_07510_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 1.3e-09 68.2 112 42.0
TWI73G1232 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 1.3e-09 68.2 108 36.1
Hma1.2p1_0012F.1_g007690 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 1.7e-09 67.8 127 35.4
Hma1.2p1_0015F.1_g010540 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 2.2e-09 67.4 108 38.0
Psat0s3118g0120 Pisum sativum HOM05D008911 ORTHO05D010818 2.9e-09 67.0 100 40.0
Prupe.4G209900 Prunus persica HOM05D000336 ORTHO05D015159 2.9e-09 67.0 279 26.2
Hma1.2p1_0015F.1_g010470 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 3.8e-09 66.6 108 38.0
Hma1.2p1_0015F.1_g010490 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 5.0e-09 66.2 108 38.0
Psat2g118200 Pisum sativum HOM05D008911 ORTHO05D010818 6.5e-09 65.9 111 35.1
TWI09G0926 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 6.5e-09 65.9 108 35.2
Haze_03479 Corylus avellana HOM05D000336 ORTHO05D000593 8.5e-09 65.5 108 34.3
Gohir.D10G033100 Gossypium hirsutum HOM05D000336 ORTHO05D000593 8.5e-09 65.5 108 36.1
Cfa010551 Carpinus fangiana HOM05D000336 ORTHO05D000593 1.4e-08 64.7 108 36.1
Dinv01258 Davidia involucrata HOM05D000336 ORTHO05D000593 1.4e-08 64.7 108 34.3
CiPaw.10G098000 Carya illinoinensis HOM05D000336 ORTHO05D000593 2.5e-08 63.9 107 32.7
Ciclev10014673m.g Citrus clementina HOM05D000336 ORTHO05D000593 3.2e-08 63.5 109 34.9
Lj1g0019231 Lotus japonicus HOM05D008911 ORTHO05D010818 3.2e-08 63.5 112 34.8
Prupe.8G049700 Prunus persica HOM05D000336 ORTHO05D015159 3.2e-08 63.5 260 26.9
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 3.2e-08 63.5 108 34.3
Prupe.4G072500 Prunus persica HOM05D000336 ORTHO05D000593 4.2e-08 63.2 167 28.1
CiPaw.09G131900 Carya illinoinensis HOM05D000336 ORTHO05D000593 5.5e-08 62.8 163 28.8
ClCG01G024140 Citrullus lanatus HOM05D000336 ORTHO05D000593 7.2e-08 62.4 171 29.2
Solyc02g071510.3 Solanum lycopersicum HOM05D000336 ORTHO05D000593 1.2e-07 61.6 108 34.3
Potri.001G355300 Populus trichocarpa HOM05D000336 ORTHO05D000593 1.6e-07 61.2 108 34.3
Prupe.8G049900 Prunus persica HOM05D000336 ORTHO05D015159 1.6e-07 61.2 271 24.4
CSS0024579 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 2.1e-07 60.8 108 34.3
CAN.G257.98 Capsicum annuum HOM05D000336 ORTHO05D000593 2.1e-07 60.8 108 33.3
QL05p052872 Quercus lobata HOM05D000336 ORTHO05D000593 2.1e-07 60.8 108 33.3
arahy.Tifrunner.gnm1.ann1.00CGR0 Arachis hypogaea HOM05D008911 ORTHO05D010818 2.7e-07 60.5 109 33.0
arahy.Tifrunner.gnm1.ann1.LA96E9 Arachis hypogaea HOM05D008911 ORTHO05D010818 2.7e-07 60.5 109 33.0
Ca_22775_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 2.7e-07 60.5 114 35.1
Ca_22776_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 2.7e-07 60.5 114 35.1
Dinv32307 Davidia involucrata HOM05D000336 ORTHO05D000593 2.7e-07 60.5 108 34.3
TAR629G3391 Trochodendron aralioides HOM05D000336 ORTHO05D000593 2.7e-07 60.5 108 33.3
Aqoxy7G01125 Aquilegia oxysepala HOM05D000336 ORTHO05D000593 3.6e-07 60.1 61 50.8
arahy.Tifrunner.gnm1.ann1.FHHV9X Arachis hypogaea HOM05D008911 ORTHO05D010818 3.6e-07 60.1 110 32.7
Ca_00499_v3 Cicer arietinum L. HOM05D000336 ORTHO05D000593 3.6e-07 60.1 108 32.4
Sopen02g020540 Solanum pennellii HOM05D000336 ORTHO05D000593 3.6e-07 60.1 108 34.3
TPR.G20632 Trifolium pratense HOM05D000336 ORTHO05D000593 3.6e-07 60.1 104 33.7
Atru.chr10.1457 Acer truncatum HOM05D000336 ORTHO05D000593 4.7e-07 59.7 108 33.3
Medtr4g039410 Medicago truncatula HOM05D016779 ORTHO05D010818 4.7e-07 59.7 107 35.5
PGSC0003DMG400007228 Solanum tuberosum HOM05D000336 ORTHO05D000593 4.7e-07 59.7 108 34.3
Aqoxy4G03222 Aquilegia oxysepala HOM05D000336 ORTHO05D000593 6.1e-07 59.3 103 36.9
arahy.Tifrunner.gnm1.ann1.QNC19D Arachis hypogaea HOM05D008911 ORTHO05D010818 6.1e-07 59.3 134 29.1
FvH4_3g06490 Fragaria vesca HOM05D000336 ORTHO05D000593 6.1e-07 59.3 108 35.2
MD07G1307600 Malus domestica HOM05D000336 ORTHO05D015159 6.1e-07 59.3 325 24.3
MD05G1292900 Malus domestica HOM05D000336 ORTHO05D000593 7.9e-07 58.9 108 31.5
TAR626G1669 Trochodendron aralioides HOM05D000336 ORTHO05D000593 7.9e-07 58.9 108 32.4
Aqoxy1G03222 Aquilegia oxysepala HOM05D000336 ORTHO05D000593 1.0e-06 58.5 189 28.6
CSS0035401 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 1.0e-06 58.5 108 33.3
Eucgr.D00352 Eucalyptus grandis HOM05D000336 ORTHO05D000593 1.0e-06 58.5 108 34.3
Medtr2g018270 Medicago truncatula HOM05D000336 ORTHO05D000593 1.0e-06 58.5 108 31.5
Medtr7g057460 Medicago truncatula HOM05D016779 ORTHO05D010818 1.0e-06 58.5 106 36.8
Medtr7g057480 Medicago truncatula HOM05D016779 ORTHO05D010818 1.0e-06 58.5 106 36.8
Nitab4.5_0003714g0120 Nicotiana tabacum HOM05D000018 ORTHO05D000593 1.0e-06 58.5 108 33.3
Migut.M00969 Erythranthe guttata HOM05D000336 ORTHO05D000593 1.4e-06 58.2 120 32.5
FAN11G0638 Fragaria x ananassa HOM05D000336 ORTHO05D000593 1.4e-06 58.2 108 34.3
Lalb_Chr13g0295421 Lupinus albus HOM05D000336 ORTHO05D000593 1.4e-06 58.2 108 34.3
MD10G1268800 Malus domestica HOM05D000336 ORTHO05D000593 1.4e-06 58.2 108 31.5
Actinidia39543 Actinidia chinensis HOM05D000336 ORTHO05D000593 1.8e-06 57.8 108 34.3
CDE01G0315 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 1.8e-06 57.8 114 32.5
FAN16G2824 Fragaria x ananassa HOM05D000336 ORTHO05D000593 1.8e-06 57.8 108 34.3
MBI05_g12582_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D000593 1.8e-06 57.8 107 34.6
Oeu046830.1 Olea europaea HOM05D000336 ORTHO05D000593 1.8e-06 57.8 108 33.3
Oeu039583.1 Olea europaea HOM05D000336 ORTHO05D000593 2.3e-06 57.4 108 33.3
PGR031G1206 Punica granatum HOM05D000336 ORTHO05D000593 2.3e-06 57.4 108 34.3
unitig_52.g17029 Utricularia gibba HOM05D000336 ORTHO05D030711 2.3e-06 57.4 136 27.2
VMungo0540G0396 Vigna mungo HOM05D000336 ORTHO05D000593 2.3e-06 57.4 108 34.3
arahy.Tifrunner.gnm1.ann1.73019P Arachis hypogaea HOM05D000336 ORTHO05D000593 3.0e-06 57.0 108 32.4
arahy.Tifrunner.gnm1.ann1.973ZBX Arachis hypogaea HOM05D000336 ORTHO05D000593 3.0e-06 57.0 108 32.4
arahy.Tifrunner.gnm1.ann1.KRWC22 Arachis hypogaea HOM05D008911 ORTHO05D010818 3.0e-06 57.0 111 35.1
FAN21G2415 Fragaria x ananassa HOM05D000336 ORTHO05D000593 3.0e-06 57.0 108 34.3
Nitab4.5_0004447g0050 Nicotiana tabacum HOM05D000018 ORTHO05D000593 3.0e-06 57.0 108 32.4
Phvul.006G168500 Phaseolus vulgaris HOM05D000336 ORTHO05D000593 3.0e-06 57.0 107 32.7
RcHm_v2.0_Chr5g0012791 Rosa chinensis HOM05D000336 ORTHO05D000593 3.0e-06 57.0 108 33.3
arahy.Tifrunner.gnm1.ann1.1WNZ6F Arachis hypogaea HOM05D008911 ORTHO05D010818 3.9e-06 56.6 109 32.1
Cc09_g09970 Coffea canephora HOM05D000336 ORTHO05D000593 3.9e-06 56.6 108 31.5
CsaV3_6G051270 Cucumis sativus L. HOM05D000336 ORTHO05D000593 3.9e-06 56.6 104 32.7
Glyma.15G089700 Glycine max HOM05D000336 ORTHO05D000593 3.9e-06 56.6 107 33.6
Lalb_Chr12g0204811 Lupinus albus HOM05D000336 ORTHO05D000593 3.9e-06 56.6 61 47.5
Medtr0637s0010 Medicago truncatula HOM05D016779 ORTHO05D010818 3.9e-06 56.6 106 34.0
Sed0008814 Sechium edule HOM05D000336 ORTHO05D000593 3.9e-06 56.6 105 29.5
CAN.G1119.13 Capsicum annuum HOM05D000336 ORTHO05D000593 5.1e-06 56.2 109 32.1
ECA246G5337 Erigeron canadensis HOM05D000336 ORTHO05D002301 5.1e-06 56.2 102 35.3
Sp3g03120 Schrenkiella parvula HOM05D000336 ORTHO05D012054 5.1e-06 56.2 100 36.0
PGSC0003DMG400010560 Solanum tuberosum HOM05D000336 ORTHO05D000593 5.1e-06 56.2 108 31.5
arahy.Tifrunner.gnm1.ann1.368SCS Arachis hypogaea HOM05D008911 ORTHO05D010818 8.8e-06 55.5 110 30.9
CAN.G782.9 Capsicum annuum HOM05D000336 ORTHO05D000593 8.8e-06 55.5 108 31.5
Cpa.g.sc17.161 Carica papaya HOM05D000336 ORTHO05D000593 8.8e-06 55.5 108 33.3
Manes.15G116300 Manihot esculenta HOM05D000336 ORTHO05D000593 8.8e-06 55.5 108 30.6
Sopen10g003940 Solanum pennellii HOM05D000336 ORTHO05D000593 8.8e-06 55.5 110 30.0


User provided reference genes

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