Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12040 Trifolium pratense HOM05D003482 ORTHO05D004194 1.4e-232 809.3 409 100.0
Psat6g006000 Pisum sativum HOM05D003482 ORTHO05D004194 2.1e-185 652.5 416 82.0
Ca_12826_v3 Cicer arietinum L. HOM05D003482 ORTHO05D004194 1.4e-181 639.8 414 79.2
VMungo0647G1298 Vigna mungo HOM05D003482 ORTHO05D004194 6.2e-169 597.8 421 73.9
Lj1g0006594 Lotus japonicus HOM05D003482 ORTHO05D004194 1.1e-168 597.0 420 73.8
Phvul.001G077100 Phaseolus vulgaris HOM05D003482 ORTHO05D004194 2.0e-167 592.8 421 72.9
Glyma.14G139800 Glycine max HOM05D003482 ORTHO05D004194 7.8e-164 580.9 422 72.0
Glyma.17G188300 Glycine max HOM05D003482 ORTHO05D004194 1.5e-159 566.6 423 70.9
Lalb_Chr14g0362391 Lupinus albus HOM05D003482 ORTHO05D004194 7.4e-154 547.7 421 69.6
arahy.Tifrunner.gnm1.ann1.21Z9DD Arachis hypogaea HOM05D003482 ORTHO05D004194 7.6e-143 511.1 406 66.5
arahy.Tifrunner.gnm1.ann1.N6E37M Arachis hypogaea HOM05D003482 ORTHO05D004194 1.3e-142 510.4 406 66.7
CiPaw.07G208900 Carya illinoinensis HOM05D003482 ORTHO05D004194 1.0e-126 457.6 431 58.0
Cfa013321 Carpinus fangiana HOM05D003482 ORTHO05D004194 1.1e-125 454.1 429 57.8
Prupe.1G455100 Prunus persica HOM05D003482 ORTHO05D004194 4.2e-125 452.2 416 57.5
Sabra06G0214300 Salix brachista HOM05D003482 ORTHO05D004194 4.2e-125 452.2 434 57.4
Potri.018G003400 Populus trichocarpa HOM05D003482 ORTHO05D004194 1.6e-124 450.3 436 56.4
Cpa.g.sc328.6 Carica papaya HOM05D003482 ORTHO05D004194 4.7e-124 448.7 419 57.3
Ciclev10007354m.g Citrus clementina HOM05D003482 ORTHO05D004194 4.7e-124 448.7 434 56.2
TWI32G0788 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 4.7e-124 448.7 434 57.4
FvH4_2g36370 Fragaria vesca HOM05D003482 ORTHO05D004194 1.4e-123 447.2 419 56.8
Sabra18G0009100 Salix brachista HOM05D003482 ORTHO05D004194 8.8e-123 444.5 456 53.9
Dinv11875 Davidia involucrata HOM05D003482 ORTHO05D004194 1.5e-122 443.7 416 58.2
QL12p026010 Quercus lobata HOM05D003482 ORTHO05D004194 1.5e-122 443.7 430 57.0
Sabra18G0002200 Salix brachista HOM05D003482 ORTHO05D004194 1.5e-122 443.7 456 53.9
Haze_21807 Corylus avellana HOM05D003482 ORTHO05D004194 2.6e-122 443.0 455 54.7
Sabra18G0008800 Salix brachista HOM05D003482 ORTHO05D004194 4.4e-122 442.2 433 55.2
MD08G1123100 Malus domestica HOM05D003482 ORTHO05D004194 5.7e-122 441.8 423 57.2
Actinidia14155 Actinidia chinensis HOM05D003482 ORTHO05D004194 2.8e-121 439.5 426 55.4
PGSC0003DMG400029592 Solanum tuberosum HOM05D003482 ORTHO05D004194 4.8e-121 438.7 428 55.4
COL.COLO4_18624 Corchorus olitorius HOM05D003482 ORTHO05D004194 8.2e-121 438.0 419 56.8
Sopen08g022930 Solanum pennellii HOM05D003482 ORTHO05D004194 1.1e-120 437.6 418 56.9
Duzib168G0916 Durio zibethinus HOM05D003482 ORTHO05D004194 2.4e-120 436.4 414 56.8
TAR506G0002 Trochodendron aralioides HOM05D003482 ORTHO05D004194 5.3e-120 435.3 444 54.7
AL6G36450 Arabidopsis lyrata HOM05D003482 ORTHO05D004194 5.9e-119 431.8 422 55.5
Sed0005804 Sechium edule HOM05D003482 ORTHO05D004194 1.0e-118 431.0 432 55.8
CARHR188650 Cardamine hirsuta HOM05D003482 ORTHO05D004194 1.3e-118 430.6 425 56.0
Sp2g22640 Schrenkiella parvula HOM05D003482 ORTHO05D004194 1.3e-118 430.6 406 57.9
C07p42960 Brassica napus HOM05D003482 ORTHO05D004194 1.7e-118 430.3 399 58.6
Carub.0006s2266 Capsella rubella HOM05D003482 ORTHO05D004194 2.2e-118 429.9 424 55.9
CAN.G195.3 Capsicum annuum HOM05D003482 ORTHO05D004194 2.2e-118 429.9 419 55.6
Thhalv10003586m.g Eutrema salsugineum HOM05D003482 ORTHO05D004194 6.5e-118 428.3 421 57.2
BolC7t44825H Brassica oleracea HOM05D003482 ORTHO05D004194 8.5e-118 427.9 399 58.4
TAR626G0827 Trochodendron aralioides HOM05D003482 ORTHO05D004194 1.9e-117 426.8 426 55.4
PSO596G0002 Papaver somniferum HOM05D003482 ORTHO05D004194 2.5e-117 426.4 414 53.6
Aa31LG11G4020 Aethionema arabicum HOM05D003482 ORTHO05D004194 3.2e-117 426.0 421 56.5
PSO423G0073 Papaver somniferum HOM05D003482 ORTHO05D004194 3.2e-117 426.0 414 54.1
Thecc.09G004000 Theobroma cacao HOM05D003482 ORTHO05D004194 3.2e-117 426.0 403 57.3
CsaV3_3G047320 Cucumis sativus L. HOM05D003482 ORTHO05D004194 4.2e-117 425.6 432 55.6
BraA06t26483Z Brassica rapa HOM05D003482 ORTHO05D004194 9.4e-117 424.5 397 57.4
DCAR_004550 Daucus carota HOM05D003482 ORTHO05D004194 9.4e-117 424.5 439 53.3
A02p40080 Brassica napus HOM05D003482 ORTHO05D004194 1.2e-116 424.1 398 59.3
A06p35580 Brassica napus HOM05D003482 ORTHO05D004194 2.7e-116 422.9 397 57.4
CANSAT25G1343 Cannabis sativa HOM05D003482 ORTHO05D004194 2.7e-116 422.9 410 56.3
Nitab4.5_0000970g0010 Nicotiana tabacum HOM05D003482 ORTHO05D004194 3.6e-116 422.5 411 56.4
C02p60040 Brassica napus HOM05D003482 ORTHO05D004194 6.1e-116 421.8 395 58.5
BraA02t08971Z Brassica rapa HOM05D003482 ORTHO05D004194 6.1e-116 421.8 395 58.0
BcaB07g29924 Brassica carinata HOM05D003482 ORTHO05D004194 1.0e-115 421.0 395 59.0
MELO3C003597.2 Cucumis melo HOM05D003482 ORTHO05D004194 1.0e-115 421.0 431 54.1
Nn8g40986 Nelumbo nucifera HOM05D003482 ORTHO05D004194 1.0e-115 421.0 414 54.6
BcaC03g17943 Brassica carinata HOM05D003482 ORTHO05D004194 1.4e-115 420.6 395 58.0
Rhsim07G0170800 Rhododendron simsii HOM05D003482 ORTHO05D004194 1.4e-115 420.6 400 56.5
Manes.03G001800 Manihot esculenta HOM05D003482 ORTHO05D004194 1.8e-115 420.2 422 55.2
Peaxi162Scf00213g01025 Petunia axillaris HOM05D003482 ORTHO05D004194 1.8e-115 420.2 418 55.0
Atru.chr7.2677 Acer truncatum HOM05D003482 ORTHO05D004194 3.0e-115 419.5 423 56.0
BolC2t12059H Brassica oleracea HOM05D003482 ORTHO05D004194 3.0e-115 419.5 395 58.0
Gohir.D05G068400 Gossypium hirsutum HOM05D003482 ORTHO05D004194 8.8e-115 417.9 421 55.1
Gorai.009G069300 Gossypium raimondii HOM05D003482 ORTHO05D004194 8.8e-115 417.9 421 55.1
Migut.A00459 Erythranthe guttata HOM05D003482 ORTHO05D004194 1.1e-114 417.5 419 54.9
THA.LOC104814963 Tarenaya hassleriana HOM05D003482 ORTHO05D004194 1.1e-114 417.5 421 56.5
Eucgr.C03989 Eucalyptus grandis HOM05D003482 ORTHO05D004194 3.3e-114 416.0 431 53.1
TWI34G0517 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 3.3e-114 416.0 397 57.2
Lj7C753G1 Lonicera japonica HOM05D003482 ORTHO05D004194 4.4e-114 415.6 465 53.1
Hund19390 Selenicereus undatus HOM05D003482 ORTHO05D004194 4.4e-114 415.6 429 55.9
Hund03269 Selenicereus undatus HOM05D003482 ORTHO05D004194 5.7e-114 415.2 428 54.7
MSTRG.11822 Avicennia marina HOM05D003482 ORTHO05D004194 9.7e-114 414.5 428 54.0
Aqoxy7G02727 Aquilegia oxysepala HOM05D003482 ORTHO05D004194 1.3e-113 414.1 427 53.9
BcaNung01256 Brassica carinata HOM05D003482 ORTHO05D004194 2.2e-113 413.3 405 56.8
Gohir.A05G066000 Gossypium hirsutum HOM05D003482 ORTHO05D004194 6.3e-113 411.8 421 54.9
Potri.006G276600 Populus trichocarpa HOM05D003482 ORTHO05D004194 6.3e-113 411.8 431 53.1
Manes.16G137200 Manihot esculenta HOM05D003482 ORTHO05D004194 8.2e-113 411.4 395 56.7
AT5G24810 Arabidopsis thaliana HOM05D003482 ORTHO05D004194 5.0e-110 402.1 403 54.1
Sc14g0002010 Simmondsia chinensis HOM05D003482 ORTHO05D004194 6.5e-110 401.7 419 54.2
RcHm_v2.0_Chr6g0305511 Rosa chinensis HOM05D003482 ORTHO05D004194 1.5e-109 400.6 374 56.4
MBI13_g31548_MAGBIO Magnolia biondii HOM05D003482 ORTHO05D004194 2.5e-109 399.8 401 52.9
CDE05G0655 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 5.2e-107 392.1 401 54.6
FAN27G0167 Fragaria x ananassa HOM05D003482 ORTHO05D004194 8.8e-107 391.3 394 53.3
PGR044G0156 Punica granatum HOM05D003482 ORTHO05D004194 8.8e-107 391.3 424 52.8
FAN20G1504 Fragaria x ananassa HOM05D003482 ORTHO05D004194 2.6e-106 389.8 398 52.0
Medtr1g008980 Medicago truncatula HOM05D003482 ORTHO05D004194 2.6e-106 389.8 263 75.3
SGA_v2.0_scaffold27G11648 Striga asiatica HOM05D003482 ORTHO05D004194 3.4e-106 389.4 437 51.7
COL.COLO4_18622 Corchorus olitorius HOM05D003482 ORTHO05D004194 7.5e-106 388.3 397 54.4
EL10Ac2g03705 Beta vulgaris HOM05D003482 ORTHO05D004194 1.1e-104 384.4 401 54.4
FAN15G0261 Fragaria x ananassa HOM05D003482 ORTHO05D004194 5.3e-104 382.1 398 51.5
Ah.10g033820 Amaranthus hybridus HOM05D002718 ORTHO05D003269 2.9e-102 376.3 442 50.5
HPP92_015798 Vanilla planifolia HOM05D003482 ORTHO05D004194 2.1e-100 370.2 400 52.5
HanXRQChr13g0411821 Helianthus annuus HOM05D003482 ORTHO05D004194 2.0e-98 363.6 424 48.8
HPP92_015810 Vanilla planifolia HOM05D003482 ORTHO05D004194 5.7e-98 362.1 400 52.0
FvH4_2g36372 Fragaria vesca HOM05D003482 ORTHO05D004194 9.8e-98 361.3 397 51.1
Zm00001eb272880 Zea mays HOM05D003482 ORTHO05D004194 1.3e-97 360.9 400 52.0
HanXRQChr03g0082881 Helianthus annuus HOM05D003482 ORTHO05D004194 3.7e-97 359.4 404 49.5
MD15G1100800 Malus domestica HOM05D003482 ORTHO05D004194 4.8e-97 359.0 388 53.9
ECA240G1915 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.8e-96 357.1 428 48.1
HanXRQChr03g0081371 Helianthus annuus HOM05D003482 ORTHO05D004194 2.0e-95 353.6 396 49.5
SalBow4G3081 Salvia bowleyana HOM05D003482 ORTHO05D004194 2.0e-95 353.6 409 49.6
Lsat_1_v5_gn_5_60380 Lactuca sativa HOM05D003482 ORTHO05D004194 7.7e-95 351.7 418 48.1
MD15G1102100 Malus domestica HOM05D003482 ORTHO05D004194 1.3e-94 350.9 368 55.2
Lsat_1_v5_gn_5_58881 Lactuca sativa HOM05D003482 ORTHO05D004194 1.2e-92 344.4 418 46.4
ATR0626G323 Amborella trichopoda HOM05D003482 ORTHO05D004194 1.6e-92 344.0 396 51.0
Lsat_1_v5_gn_5_60400 Lactuca sativa HOM05D003482 ORTHO05D004194 8.0e-92 341.7 411 47.0
Lalb_Chr22g0361011 Lupinus albus HOM05D003482 ORTHO05D004194 7.0e-88 328.6 228 71.9
HanXRQChr03g0082871 Helianthus annuus HOM05D003482 ORTHO05D004194 2.3e-86 323.6 390 48.7
Lsat_1_v5_gn_5_58921 Lactuca sativa HOM05D003482 ORTHO05D004194 2.5e-85 320.1 402 45.5
Lsat_1_v5_gn_5_58361 Lactuca sativa HOM05D003482 ORTHO05D004194 4.3e-85 319.3 399 46.1
Lsat_1_v5_gn_5_59000 Lactuca sativa HOM05D003482 ORTHO05D004194 9.5e-85 318.2 399 45.9
vmacro05099 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 3.6e-84 316.2 298 57.7
ECA240G4147 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.0e-83 314.7 396 46.0
ECA240G2590 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.4e-80 303.5 391 45.3
HanXRQChr13g0411841 Helianthus annuus HOM05D003482 ORTHO05D004194 2.4e-80 303.5 397 45.3
HanXRQChr13g0407961 Helianthus annuus HOM05D003482 ORTHO05D004194 9.2e-80 301.6 397 44.8
ECA240G0756 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.7e-78 297.4 396 43.9
ECA233G2479 Erigeron canadensis HOM05D003482 ORTHO05D004194 8.6e-78 295.0 371 46.9
ECA240G0557 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.3e-75 287.0 396 43.9
HanXRQChr13g0411981 Helianthus annuus HOM05D003482 ORTHO05D004194 2.3e-75 287.0 399 43.4
HanXRQChr13g0412011 Helianthus annuus HOM05D003482 ORTHO05D004194 4.4e-74 282.7 393 42.2
Oeu059293.1 Olea europaea HOM05D003482 ORTHO05D004194 7.5e-74 282.0 277 56.3
Mapoly0007s0194 Marchantia polymorpha HOM05D003482 ORTHO05D004194 2.2e-73 280.4 421 41.6
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.4e-72 277.7 355 46.2
HanXRQChr13g0412001 Helianthus annuus HOM05D003482 ORTHO05D004194 3.5e-71 273.1 391 43.2
Lsat_1_v5_gn_5_60480 Lactuca sativa HOM05D003482 ORTHO05D004194 1.1e-69 268.1 420 39.8
Lsat_1_v5_gn_6_15541 Lactuca sativa HOM05D003482 ORTHO05D004194 1.1e-69 268.1 397 43.3
ECA240G2186 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.2e-68 264.6 410 40.2
SEGI_21174 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 4.7e-68 262.7 316 50.0
ECA240G3793 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.4e-67 261.2 381 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3219 Anthoceros agrestis HOM05D003482 ORTHO05D004194 5.2e-67 259.2 401 41.4
Cc00_g11230 Coffea canephora HOM05D003482 ORTHO05D004194 5.2e-67 259.2 288 51.7
Lsat_1_v5_gn_5_60420 Lactuca sativa HOM05D003482 ORTHO05D004194 5.2e-67 259.2 414 39.4
Pp3c5_19100 Physcomitrium patens HOM05D003482 ORTHO05D004194 1.5e-66 257.7 416 40.6
Pp3c16_18060 Physcomitrium patens HOM05D003482 ORTHO05D004194 5.4e-64 249.2 417 39.6
SMO353G0164 Selaginella moellendorffii HOM05D003482 ORTHO05D004194 1.3e-62 244.6 408 39.0
Lsat_1_v5_gn_5_60580 Lactuca sativa HOM05D003482 ORTHO05D004194 2.8e-60 236.9 512 33.6
SMO353G0165 Selaginella moellendorffii HOM05D003482 ORTHO05D004194 1.8e-59 234.2 398 38.9
AagrBONN_evm.TU.Sc2ySwM_228.3217 Anthoceros agrestis HOM05D003482 ORTHO05D004194 1.5e-58 231.1 398 36.9
Potri.018G004500 Populus trichocarpa HOM05D003482 ORTHO05D004194 9.3e-56 221.9 271 49.4
Sabra18G0005800 Salix brachista HOM05D003482 ORTHO05D004194 5.1e-54 216.1 207 57.5
Sabra18G0007800 Salix brachista HOM05D003482 ORTHO05D004194 5.1e-54 216.1 207 57.5
Lalb_Chr22g0361021 Lupinus albus HOM05D003482 ORTHO05D004194 1.1e-53 214.9 131 78.6
CSS0039275 Camellia sinensis var. sinensis HOM05D003482 ORTHO05D004194 3.2e-48 196.8 160 60.6
ECA240G1043 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.8e-43 181.0 289 40.5
Nitab4.5_0000502g0210 Nicotiana tabacum HOM05D003482 ORTHO05D019565 1.1e-35 155.2 179 49.7
vmacro05100 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 1.5e-34 151.4 128 57.8
Nitab4.5_0000919g0060 Nicotiana tabacum HOM05D003482 ORTHO05D004194 3.2e-32 143.7 145 53.1
PSO832G2792 Papaver somniferum HOM05D003482 ORTHO05D004194 4.2e-32 143.3 196 45.4
Oeu059294.1 Olea europaea HOM05D003482 ORTHO05D004194 1.3e-30 138.3 128 53.9
GSVIVG01035556001 Vitis vinifera HOM05D003482 ORTHO05D004194 2.5e-29 134.0 122 55.7
CDE05G2143 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 1.3e-22 111.7 99 61.6
Potri.018G003600 Populus trichocarpa HOM05D003482 ORTHO05D004194 5.7e-21 106.3 60 75.0
CBR_g4189 Chara braunii HOM05D003482 ORTHO05D004194 3.1e-19 100.5 141 34.0
Sabra18G0012500 Salix brachista HOM05D000009 ORTHO05D000008 3.1e-19 100.5 60 73.3
Sabra18G0012600 Salix brachista HOM05D003482 ORTHO05D010018 5.0e-17 93.2 74 63.5
Lsat_1_v5_gn_5_60340 Lactuca sativa HOM05D003482 ORTHO05D004194 6.5e-17 92.8 78 55.1
Solyc08g074280.4 Solanum lycopersicum HOM05D003482 ORTHO05D004194 2.7e-15 87.4 47 78.7
Lsat_1_v5_gn_5_60320 Lactuca sativa HOM05D003482 ORTHO05D004194 1.8e-14 84.7 81 56.8
PSO058G0001 Papaver somniferum HOM05D003482 ORTHO05D004194 2.8e-12 77.4 56 64.3
SEGI_21512 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 6.3e-12 76.3 60 50.0
Potri.012G082950 Populus trichocarpa HOM05D003482 ORTHO05D004194 1.8e-11 74.7 50 68.0
Lsat_1_v5_gn_7_104720 Lactuca sativa HOM05D003482 ORTHO05D004194 4.5e-10 70.1 50 60.0
Sabra18G0010300 Salix brachista HOM05D003482 ORTHO05D003343 2.9e-09 67.4 55 60.0
Os06g0701300 Oryza sativa ssp. japonica HOM05D003482 ORTHO05D004194 2.7e-07 60.8 34 76.5


User provided reference genes

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