Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12034 Trifolium pratense HOM05D007029 ORTHO05D008258 1.6e-103 379.4 193 100.0
Psat6g031920 Pisum sativum HOM05D007029 ORTHO05D008258 2.5e-91 339.0 194 89.7
Ca_12881_v3 Cicer arietinum L. HOM05D007029 ORTHO05D008258 1.4e-83 313.2 194 83.5
Lj5g0005194 Lotus japonicus HOM05D007029 ORTHO05D008258 2.6e-77 292.4 196 77.0
Lalb_Chr24g0402421 Lupinus albus HOM05D007029 ORTHO05D008258 2.6e-77 292.4 182 78.6
Glyma.14G132800 Glycine max HOM05D007029 ORTHO05D008258 5.9e-77 291.2 193 79.3
Phvul.001G057900 Phaseolus vulgaris HOM05D007029 ORTHO05D008258 7.7e-77 290.8 189 80.4
Cfa013252 Carpinus fangiana HOM05D007029 ORTHO05D008258 2.7e-74 282.3 185 75.7
MELO3C003643.2 Cucumis melo HOM05D007029 ORTHO05D008258 1.4e-73 280.0 165 80.0
Sed0023533 Sechium edule HOM05D007029 ORTHO05D008258 3.3e-72 275.4 165 78.8
Duzib168G0066 Durio zibethinus HOM05D007029 ORTHO05D008258 3.7e-71 271.9 165 80.0
Potri.006G278500 Populus trichocarpa HOM05D007029 ORTHO05D008258 6.3e-71 271.2 165 78.8
Thecc.09G005000 Theobroma cacao HOM05D007029 ORTHO05D008258 1.1e-70 270.4 179 75.4
Manes.03G086800 Manihot esculenta HOM05D007029 ORTHO05D008258 1.4e-70 270.0 165 77.6
Sabra06G0216100 Salix brachista HOM05D007029 ORTHO05D008258 2.4e-70 269.2 165 78.8
CSS0017002 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 1.3e-68 263.5 189 69.8
CSS0043998 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 1.3e-68 263.5 189 69.8
GSVIVG01035546001 Vitis vinifera HOM05D007029 ORTHO05D008258 1.3e-68 263.5 182 70.9
Sc09g0007900 Simmondsia chinensis HOM05D007029 ORTHO05D008258 2.2e-68 262.7 189 67.7
Prupe.1G462300 Prunus persica HOM05D007029 ORTHO05D008258 2.9e-68 262.3 165 75.8
RcHm_v2.0_Chr6g0312221 Rosa chinensis HOM05D007029 ORTHO05D008258 2.9e-68 262.3 182 69.2
MD15G1110100 Malus domestica HOM05D007029 ORTHO05D008258 8.5e-68 260.8 182 69.8
Cpa.g.sc10.205 Carica papaya HOM05D007029 ORTHO05D008258 1.1e-67 260.4 209 65.6
CsaV3_3G046940 Cucumis sativus L. HOM05D007029 ORTHO05D008258 1.1e-67 260.4 185 70.3
Sc09g0007640 Simmondsia chinensis HOM05D007029 ORTHO05D008258 1.1e-67 260.4 189 67.2
TAR626G0900 Trochodendron aralioides HOM05D007029 ORTHO05D008258 4.2e-67 258.5 183 68.9
FAN20G2423 Fragaria x ananassa HOM05D007029 ORTHO05D008258 5.5e-67 258.1 179 69.3
FvH4_2g30670 Fragaria vesca HOM05D007029 ORTHO05D008258 9.4e-67 257.3 179 68.7
Gorai.010G123900 Gossypium raimondii HOM05D007029 ORTHO05D008258 2.7e-66 255.8 193 66.3
Nitab4.5_0003963g0040 Nicotiana tabacum HOM05D007029 ORTHO05D008258 2.7e-66 255.8 170 70.6
CiPaw.07G214600 Carya illinoinensis HOM05D007029 ORTHO05D008258 3.6e-66 255.4 187 68.4
Nitab4.5_0001159g0100 Nicotiana tabacum HOM05D007029 ORTHO05D008258 6.1e-66 254.6 170 70.0
FAN24G0248 Fragaria x ananassa HOM05D007029 ORTHO05D008258 7.9e-66 254.2 179 68.2
Hund03277 Selenicereus undatus HOM05D007029 ORTHO05D008258 1.0e-65 253.8 181 66.9
AL6G21140 Arabidopsis lyrata HOM05D007029 ORTHO05D008258 1.4e-65 253.4 182 69.2
Thhalv10014744m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 1.4e-65 253.4 179 69.8
MSTRG.25772 Avicennia marina HOM05D007029 ORTHO05D008258 2.3e-65 252.7 165 73.3
Migut.A00446 Erythranthe guttata HOM05D007029 ORTHO05D008258 2.3e-65 252.7 186 65.1
PGR044G0703 Punica granatum HOM05D007029 ORTHO05D008258 2.3e-65 252.7 189 65.6
CANSAT25G3139 Cannabis sativa HOM05D007029 ORTHO05D008258 3.0e-65 252.3 158 78.5
CAN.G947.13 Capsicum annuum HOM05D007029 ORTHO05D008258 3.9e-65 251.9 166 71.1
CARHR202690 Cardamine hirsuta HOM05D007029 ORTHO05D008258 8.8e-65 250.8 165 72.1
Eucgr.C03998 Eucalyptus grandis HOM05D007029 ORTHO05D008258 8.8e-65 250.8 170 70.0
Sp6g32830 Schrenkiella parvula HOM05D007029 ORTHO05D008258 8.8e-65 250.8 179 69.3
Sopen12g032190 Solanum pennellii HOM05D007029 ORTHO05D008258 8.8e-65 250.8 166 71.1
C09p66200 Brassica napus HOM05D007029 ORTHO05D008258 1.1e-64 250.4 179 68.7
BolC9t59441H Brassica oleracea HOM05D007029 ORTHO05D008258 1.1e-64 250.4 179 68.7
AT5G10620 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 1.5e-64 250.0 179 69.3
PSO144G0063 Papaver somniferum HOM05D007029 ORTHO05D008258 1.5e-64 250.0 170 68.2
Atru.chr7.2665 Acer truncatum HOM05D007029 ORTHO05D008258 2.0e-64 249.6 191 67.5
BcaB08g37096 Brassica carinata HOM05D007029 ORTHO05D008258 2.0e-64 249.6 165 70.9
Aqoxy7G02769 Aquilegia oxysepala HOM05D007029 ORTHO05D008258 2.6e-64 249.2 179 67.6
Lj7A749T66 Lonicera japonica HOM05D007029 ORTHO05D008258 3.3e-64 248.8 166 72.3
Nn8g40869 Nelumbo nucifera HOM05D007029 ORTHO05D008258 4.4e-64 248.4 166 69.3
BolC9t59447H Brassica oleracea HOM05D007029 ORTHO05D008258 1.7e-63 246.5 179 67.6
THA.LOC104799006 Tarenaya hassleriana HOM05D007029 ORTHO05D008258 2.8e-63 245.7 189 66.7
arahy.Tifrunner.gnm1.ann1.MMLL3W Arachis hypogaea HOM05D007029 ORTHO05D008258 3.7e-63 245.4 169 74.6
QL12p024672 Quercus lobata HOM05D007029 ORTHO05D008258 3.7e-63 245.4 169 70.4
BraA10t44748Z Brassica rapa HOM05D007029 ORTHO05D008258 4.8e-63 245.0 166 68.7
SalBow4G2612 Salvia bowleyana HOM05D007029 ORTHO05D008258 6.3e-63 244.6 158 72.2
Aa31LG3G16490 Aethionema arabicum HOM05D007029 ORTHO05D008258 8.2e-63 244.2 182 66.5
Glyma.17G201400 Glycine max HOM05D007029 ORTHO05D008258 3.1e-62 242.3 138 84.1
A10p26970 Brassica napus HOM05D007029 ORTHO05D008258 1.2e-61 240.4 160 70.6
C09p66570 Brassica napus HOM05D007029 ORTHO05D008258 5.9e-61 238.0 158 72.2
C09p66410 Brassica napus HOM05D007029 ORTHO05D008258 1.3e-60 236.9 158 71.5
ClCG05G017440 Citrullus lanatus HOM05D007029 ORTHO05D008258 1.3e-60 236.9 146 77.4
ATR0626G398 Amborella trichopoda HOM05D007029 ORTHO05D008258 5.0e-60 235.0 160 65.0
unitig_748.g7379 Utricularia gibba HOM05D007029 ORTHO05D008258 8.5e-60 234.2 161 68.9
Gohir.A06G106900 Gossypium hirsutum HOM05D007029 ORTHO05D008258 5.5e-59 231.5 180 65.0
Os04g0606900 Oryza sativa ssp. japonica HOM05D007029 ORTHO05D008258 7.2e-59 231.1 166 63.9
EL10Ac2g03716 Beta vulgaris HOM05D007029 ORTHO05D008258 2.1e-58 229.6 152 71.1
HanXRQChr14g0454741 Helianthus annuus HOM05D007029 ORTHO05D008258 2.7e-58 229.2 167 64.1
Oeu059287.2 Olea europaea HOM05D007029 ORTHO05D008258 6.1e-58 228.0 171 65.5
PGSC0003DMG400029282 Solanum tuberosum HOM05D007029 ORTHO05D008258 8.0e-58 227.6 174 65.5
TWI63G1096 Tripterygium wilfordii HOM05D007029 ORTHO05D008258 8.8e-57 224.2 159 66.0
arahy.Tifrunner.gnm1.ann1.J6QZET Arachis hypogaea HOM05D007029 ORTHO05D008258 1.5e-56 223.4 164 72.0
Zm00001eb071440 Zea mays HOM05D007029 ORTHO05D008258 1.7e-55 219.9 172 60.5
Cc06_g08830 Coffea canephora HOM05D007029 ORTHO05D008258 5.3e-54 214.9 165 61.2
Carub.0006s0910 Capsella rubella HOM05D007029 ORTHO05D008258 2.0e-53 213.0 171 62.6
Ciclev10009808m.g Citrus clementina HOM05D007029 ORTHO05D008258 1.3e-52 210.3 165 64.8
Medtr1g010000 Medicago truncatula HOM05D007029 ORTHO05D008258 2.5e-51 206.1 170 67.1
Pp3c10_14520 Physcomitrium patens HOM05D007029 ORTHO05D008258 2.5e-51 206.1 182 54.4
Mapoly0056s0124 Marchantia polymorpha HOM05D007029 ORTHO05D008258 3.0e-49 199.1 161 57.8
SGA_v2.0_scaffold27G11664 Striga asiatica HOM05D007029 ORTHO05D008258 3.0e-49 199.1 268 43.7
COL.COLO4_18612 Corchorus olitorius HOM05D007029 ORTHO05D008258 6.3e-47 191.4 121 74.4
AagrBONN_evm.TU.Sc2ySwM_368.1595 Anthoceros agrestis HOM05D007029 ORTHO05D008258 2.7e-45 186.0 178 51.7
CBR_g21129 Chara braunii HOM05D007029 ORTHO05D008258 2.7e-45 186.0 169 53.3
Oeu038914.4 Olea europaea HOM05D000263 ORTHO05D008258 7.7e-45 184.5 125 68.8
MBI13_g31530_MAGBIO Magnolia biondii HOM05D007029 ORTHO05D008258 1.7e-44 183.3 183 53.0
SMO145G0271 Selaginella moellendorffii HOM05D007029 ORTHO05D008258 5.5e-43 178.3 158 52.5
Dinv09200 Davidia involucrata HOM05D007029 ORTHO05D008258 7.2e-43 177.9 140 64.3
Haze_08560 Corylus avellana HOM05D007029 ORTHO05D008258 8.0e-42 174.5 175 56.0
VMungo0647G0111 Vigna mungo HOM05D007029 ORTHO05D008258 2.0e-40 169.9 134 69.4
Actinidia22252 Actinidia chinensis HOM05D007029 ORTHO05D008258 2.2e-39 166.4 121 64.5
CDE04G2652 Ceratophyllum demersum HOM05D000178 ORTHO05D000229 6.3e-39 164.9 109 73.4
MCO07G593 Micromonas commoda HOM05D007029 ORTHO05D008258 6.3e-39 164.9 161 48.4
Lsat_1_v5_gn_2_109441 Lactuca sativa HOM05D007029 ORTHO05D008258 1.8e-38 163.3 132 59.8
SEGI_22347 Sequoiadendron giganteum HOM05D007029 ORTHO05D008258 1.2e-37 160.6 132 54.5
Cre16.g680100 Chlamydomonas reinhardtii HOM05D007029 ORTHO05D008258 1.6e-37 160.2 159 51.6
Solyc12g096330.3 Solanum lycopersicum HOM05D007029 ORTHO05D008258 2.9e-36 156.0 97 73.2
AUR62020630 Chenopodium quinoa HOM05D007029 ORTHO05D008258 1.6e-34 150.2 120 57.5
AUR62038752 Chenopodium quinoa HOM05D007029 ORTHO05D008258 3.6e-34 149.1 103 66.0
Ah.10g033770 Amaranthus hybridus HOM05D007029 ORTHO05D008258 6.1e-34 148.3 103 63.1
Peaxi162Scf00459g00835 Petunia axillaris HOM05D007029 ORTHO05D008258 4.0e-33 145.6 99 69.7
Gohir.D06G109100 Gossypium hirsutum HOM05D007029 ORTHO05D008258 6.8e-33 144.8 103 69.9
Oeu059279.1 Olea europaea HOM05D007029 ORTHO05D008258 8.9e-33 144.4 98 71.4
C09p66490 Brassica napus HOM05D007029 ORTHO05D008258 1.5e-32 143.7 88 76.1
C09p66660 Brassica napus HOM05D007029 ORTHO05D008258 3.7e-31 139.0 97 68.0
Thhalv10000503m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 7.8e-29 131.3 131 57.3
Haze_21697 Corylus avellana HOM05D000022 ORTHO05D010831 5.0e-28 128.6 97 69.1
Hma1.2p1_0443F.1_g154050 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 1.6e-26 123.6 75 78.7
PRCOL_00001289 Prasinoderma coloniale HOM05D007029 ORTHO05D008258 1.9e-22 110.2 138 41.3
COL.COLO4_02059 Corchorus olitorius HOM05D007029 ORTHO05D008258 5.6e-19 98.6 155 31.0
Hma1.2p1_0443F.1_g154040 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 4.0e-17 92.4 76 61.8
Hma1.2p1_0443F.1_g154060 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 1.4e-14 84.0 49 79.6
ECA238G0229 Erigeron canadensis HOM05D007029 ORTHO05D008258 2.4e-14 83.2 69 53.6
CDE07G1585 Ceratophyllum demersum HOM05D003168 ORTHO05D003590 1.9e-11 73.6 49 71.4
AT5G10605 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 9.2e-06 54.7 36 69.4


User provided reference genes

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