Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.8e-95 352.8 211 100.0
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 9.5e-89 330.5 211 86.7
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 2.4e-79 299.3 174 93.1
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 2.6e-78 295.8 215 78.1
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 3.8e-77 292.0 215 76.7
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 2.4e-76 289.3 215 76.3
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 2.4e-76 289.3 215 81.9
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 1.3e-74 283.5 217 76.0
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 1.3e-69 266.9 224 70.5
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 2.7e-67 259.2 212 71.2
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 1.7e-66 256.5 211 68.2
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 3.9e-66 255.4 177 78.0
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 7.3e-65 251.1 211 68.7
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 9.6e-65 250.8 211 67.8
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 3.6e-64 248.8 216 70.4
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 1.1e-63 247.3 211 67.3
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 5.3e-63 245.0 220 65.9
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 2.0e-62 243.0 211 65.9
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 2.0e-62 243.0 214 65.9
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 2.0e-62 243.0 212 67.5
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 3.4e-62 242.3 212 67.9
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 5.8e-62 241.5 212 66.0
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 1.9e-60 236.5 210 66.7
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 1.9e-60 236.5 212 64.2
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 2.4e-60 236.1 209 66.0
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 7.1e-60 234.6 177 72.3
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 9.3e-60 234.2 167 77.2
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 1.2e-59 233.8 211 64.5
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.2e-59 233.8 212 63.2
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 4.6e-59 231.9 207 66.2
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 6.0e-59 231.5 213 63.8
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 1.0e-58 230.7 177 71.2
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 1.0e-58 230.7 177 71.2
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 1.3e-58 230.3 211 63.0
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 1.8e-58 229.9 211 64.0
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 1.8e-58 229.9 211 63.5
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 5.1e-58 228.4 212 64.6
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 6.7e-58 228.0 211 62.6
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 8.7e-58 227.6 213 63.4
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 8.7e-58 227.6 178 69.1
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 2.5e-57 226.1 211 62.1
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 3.3e-57 225.7 210 61.0
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 4.3e-57 225.3 211 63.5
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 4.8e-56 221.9 169 69.8
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 1.1e-55 220.7 222 59.0
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 1.4e-55 220.3 212 61.8
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 1.8e-55 219.9 211 60.2
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 2.4e-55 219.5 178 66.9
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 2.0e-54 216.5 173 68.8
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 3.4e-54 215.7 177 65.0
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 7.6e-54 214.5 213 57.7
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 1.0e-53 214.2 214 58.4
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 1.7e-53 213.4 212 60.8
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 2.2e-53 213.0 209 60.8
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 2.9e-53 212.6 177 63.8
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 3.8e-53 212.2 226 57.1
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 4.9e-53 211.8 215 57.7
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 8.4e-53 211.1 213 57.7
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 1.9e-52 209.9 213 58.7
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 2.5e-52 209.5 213 58.2
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 7.1e-52 208.0 210 58.6
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 9.3e-52 207.6 212 57.1
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 2.1e-51 206.5 213 57.7
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 6.0e-51 204.9 213 56.3
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 2.3e-50 203.0 172 65.1
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 1.5e-49 200.3 178 62.9
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.9e-49 199.9 208 58.7
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 1.9e-49 199.9 178 64.0
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 1.6e-48 196.8 211 57.8
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 5.3e-47 191.8 213 55.4
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 5.3e-47 191.8 255 51.0
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 9.0e-47 191.0 213 55.4
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 9.0e-47 191.0 170 64.7
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 1.0e-45 187.6 212 54.2
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 1.9e-44 183.3 146 69.9
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 2.5e-44 183.0 145 71.0
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 4.2e-44 182.2 211 50.7
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 3.5e-43 179.1 216 51.9
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 3.5e-43 179.1 211 55.0
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 3.9e-42 175.6 211 53.1
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 1.5e-41 173.7 206 51.0
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 2.5e-41 172.9 177 55.9
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 7.4e-41 171.4 151 63.6
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.3e-40 170.6 165 60.0
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 3.7e-40 169.1 202 50.5
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 3.7e-40 169.1 171 58.5
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 3.7e-40 169.1 177 53.1
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 4.8e-40 168.7 151 63.6
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 4.1e-39 165.6 144 65.3
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 6.9e-39 164.9 155 64.5
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 6.9e-39 164.9 146 63.7
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 1.9e-36 156.8 170 51.2
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 2.5e-36 156.4 213 50.2
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 7.2e-36 154.8 163 55.8
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 1.2e-35 154.1 158 57.6
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 2.1e-35 153.3 164 56.7
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 1.4e-34 150.6 174 54.0
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 1.8e-34 150.2 146 60.3
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 3.9e-34 149.1 155 56.1
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 9.7e-33 144.4 171 43.9
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 1.3e-32 144.1 211 47.4
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 1.5e-30 137.1 213 48.4
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 2.6e-30 136.3 214 48.1
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 3.8e-29 132.5 216 47.2
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 3.2e-28 129.4 172 41.3
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 6.7e-26 121.7 169 47.9
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 2.6e-22 109.8 212 40.1
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 2.7e-19 99.8 101 59.4
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.0e-18 97.8 146 43.8
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 5.2e-18 95.5 153 37.9
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 6.7e-18 95.1 131 48.9
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 1.1e-15 87.8 69 69.6
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 1.2e-14 84.3 172 38.4
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.0e-14 83.6 88 56.8
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 8.5e-13 78.2 68 64.7
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 9.4e-12 74.7 97 47.4
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.6e-11 73.9 167 36.5
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 2.1e-11 73.6 167 36.5
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 3.0e-10 69.7 144 38.2
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 5.2e-10 68.9 77 54.5
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.2e-09 67.8 67 53.7
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 4.4e-09 65.9 48 72.9
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 1.8e-07 60.5 55 58.2
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 3.1e-07 59.7 79 48.1
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 7.0e-07 58.5 98 40.8


User provided reference genes

Program Settings