Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 6.5e-86 320.9 182 100.0
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 9.4e-85 317.0 182 94.0
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.0e-78 297.0 187 86.1
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.7e-78 296.2 187 85.6
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.2e-74 283.5 187 81.8
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 2.2e-73 279.3 187 80.2
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 1.8e-72 276.2 193 79.3
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 3.1e-72 275.4 187 79.1
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 9.1e-72 273.9 193 78.2
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.0e-70 270.4 185 80.5
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 2.9e-70 268.9 187 77.5
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 3.8e-70 268.5 193 78.2
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.1e-64 250.4 163 82.8
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 2.0e-63 246.1 195 70.8
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 6.6e-62 241.1 189 69.8
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 8.6e-62 240.7 190 69.5
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.1e-61 240.4 190 68.9
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.6e-60 236.5 180 70.0
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 2.1e-60 236.1 190 68.9
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 2.8e-60 235.7 190 69.5
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.6e-60 235.3 187 69.5
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 3.6e-60 235.3 187 70.6
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 4.7e-60 235.0 192 68.2
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 8.0e-60 234.2 190 67.9
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 8.0e-60 234.2 190 68.4
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 8.0e-60 234.2 187 69.0
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 8.0e-60 234.2 190 68.4
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.4e-59 233.4 190 68.4
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 1.8e-59 233.0 186 69.4
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 1.8e-59 233.0 177 70.1
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.8e-59 233.0 190 67.4
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.8e-59 233.0 190 67.4
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.8e-59 233.0 190 67.9
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.3e-59 232.6 191 68.6
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 3.0e-59 232.3 177 70.1
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 6.8e-59 231.1 190 66.8
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 6.8e-59 231.1 193 66.8
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 8.9e-59 230.7 186 68.8
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.2e-58 230.3 188 67.6
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 2.0e-58 229.6 190 66.3
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 3.4e-58 228.8 190 66.8
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.4e-58 228.4 180 68.9
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 5.7e-58 228.0 191 65.4
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 7.5e-58 227.6 190 64.7
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 7.5e-58 227.6 189 66.7
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 9.8e-58 227.3 190 66.3
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 9.8e-58 227.3 195 65.1
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.2e-57 226.1 188 66.5
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 2.2e-57 226.1 174 69.5
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 2.9e-57 225.7 190 67.4
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.1e-56 223.8 188 62.8
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 1.4e-56 223.4 187 66.8
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 5.4e-56 221.5 192 64.6
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 5.4e-56 221.5 192 64.6
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 5.4e-56 221.5 182 67.0
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 7.0e-56 221.1 190 63.2
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.0e-56 221.1 195 64.1
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 7.0e-56 221.1 188 63.8
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.2e-55 220.3 192 66.1
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.6e-55 219.9 189 65.6
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 2.0e-55 219.5 192 64.6
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 2.7e-55 219.2 193 68.4
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 5.9e-55 218.0 182 65.4
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 7.8e-55 217.6 190 62.1
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 7.8e-55 217.6 193 67.9
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.7e-54 216.5 195 63.6
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.7e-54 216.5 184 64.1
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 3.0e-54 215.7 190 64.7
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 3.9e-54 215.3 190 65.3
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 5.0e-54 214.9 156 70.5
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 6.6e-54 214.5 200 63.0
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 6.6e-54 214.5 200 63.0
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 8.6e-54 214.2 189 64.0
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 1.5e-53 213.4 155 72.3
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.9e-53 213.0 187 62.6
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.9e-53 213.0 169 71.6
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 2.5e-53 212.6 185 62.2
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.5e-53 212.6 200 62.5
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 3.3e-53 212.2 189 64.0
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 3.3e-53 212.2 193 63.2
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 3.3e-53 212.2 175 66.9
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 4.3e-53 211.8 185 61.6
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 5.6e-53 211.5 191 60.7
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 7.3e-53 211.1 186 61.3
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.2e-52 210.3 187 62.0
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.2e-52 210.3 187 62.0
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 1.2e-52 210.3 182 62.6
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.2e-52 210.3 192 58.9
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.6e-52 209.9 191 60.2
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 1.6e-52 209.9 186 63.4
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 6.2e-52 208.0 193 59.6
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 8.0e-52 207.6 174 66.1
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 2.3e-51 206.1 192 59.9
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 2.3e-51 206.1 192 59.4
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 3.1e-51 205.7 185 61.1
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 4.0e-51 205.3 207 57.0
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 4.0e-51 205.3 199 58.8
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 5.2e-51 204.9 185 62.2
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 5.2e-51 204.9 185 62.2
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 5.2e-51 204.9 185 61.1
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 6.8e-51 204.5 169 66.9
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 6.8e-51 204.5 168 67.3
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.2e-50 203.8 200 60.0
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 2.6e-50 202.6 177 59.3
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 3.4e-50 202.2 168 64.3
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 4.4e-50 201.8 199 57.3
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 1.3e-49 200.3 162 64.2
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.7e-49 199.9 188 62.8
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 6.4e-49 198.0 187 59.9
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 8.3e-49 197.6 150 69.3
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 1.9e-48 196.4 196 57.7
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 1.9e-48 196.4 182 59.9
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 2.4e-48 196.1 164 68.3
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 4.1e-48 195.3 187 59.4
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 5.4e-48 194.9 206 54.9
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 5.4e-48 194.9 192 59.9
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 9.2e-48 194.1 189 59.3
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 2.7e-47 192.6 157 61.8
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.7e-47 192.6 186 59.7
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 3.5e-47 192.2 186 57.0
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 6.0e-47 191.4 158 65.8
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.3e-46 189.5 165 62.4
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 5.0e-46 188.3 195 55.9
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 2.1e-44 183.0 154 64.9
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 1.1e-43 180.6 176 54.0
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.4e-43 180.3 169 59.2
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 2.6e-42 176.0 165 58.8
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.9e-40 169.9 108 73.1
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 3.2e-40 169.1 181 55.8
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 7.1e-40 167.9 157 56.7
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.3e-38 162.9 106 76.4
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 1.1e-37 160.6 144 59.0
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 7.3e-37 157.9 201 50.7
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 3.1e-35 152.5 227 45.8
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.4e-32 143.7 136 61.8
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.1e-32 142.1 173 50.3
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 9.2e-32 141.0 132 60.6
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 6.0e-31 138.3 151 52.3
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.0e-30 137.5 157 46.5
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.3e-30 136.3 125 60.0
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.9e-30 135.6 125 59.2
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 6.6e-30 134.8 82 79.3
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 6.6e-30 134.8 125 59.2
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.1e-29 134.0 106 63.2
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.3e-29 132.5 125 60.0
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.3e-29 132.5 123 57.7
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 9.6e-29 131.0 87 69.0
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 6.9e-27 124.8 177 39.0
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.2e-26 124.0 185 42.7
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 3.4e-26 122.5 146 41.8
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 7.6e-26 121.3 172 39.0
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 1.3e-25 120.6 149 44.3
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 8.1e-20 101.3 134 42.5
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.1e-19 99.4 115 50.4
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 3.5e-15 85.9 81 58.0
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 3.0e-14 82.8 176 36.4
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 1.9e-13 80.1 57 64.9
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 2.4e-11 73.2 167 37.7
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 7.1e-08 61.6 106 43.4


User provided reference genes

Program Settings