Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 7.3e-101 370.5 186 100.0
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.1e-91 340.1 193 90.2
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 5.8e-90 334.3 193 88.1
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 2.7e-87 325.5 193 85.5
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 8.7e-86 320.5 191 82.7
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 4.3e-85 318.2 191 82.7
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 5.6e-85 317.8 187 84.0
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.8e-83 312.8 191 82.7
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 8.4e-81 303.9 170 88.2
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 8.4e-81 303.9 194 79.4
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 1.1e-80 303.5 188 79.8
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 8.7e-78 293.9 191 78.5
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 1.8e-75 286.2 191 73.8
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 2.0e-74 282.7 187 75.4
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 3.4e-74 282.0 187 74.3
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 4.5e-74 281.6 177 78.0
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 1.7e-73 279.6 187 74.3
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.4e-72 276.6 189 72.0
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 9.3e-72 273.9 179 74.9
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 2.7e-71 272.3 187 69.5
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 6.0e-71 271.2 185 70.8
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 1.0e-70 270.4 195 69.7
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 1.3e-70 270.0 183 71.6
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 1.8e-70 269.6 186 70.4
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 3.0e-70 268.9 179 73.7
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 5.1e-70 268.1 184 69.6
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 1.5e-69 266.5 182 69.8
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 1.5e-69 266.5 190 72.6
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.9e-69 266.2 187 70.6
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 4.3e-69 265.0 190 66.3
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 7.4e-69 264.2 192 68.8
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 7.4e-69 264.2 185 68.6
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 7.4e-69 264.2 184 69.6
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 2.2e-68 262.7 188 70.2
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 2.8e-68 262.3 189 66.7
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 4.8e-68 261.5 179 71.5
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 4.8e-68 261.5 181 70.2
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 6.3e-68 261.2 177 71.8
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 6.3e-68 261.2 185 68.1
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 1.1e-67 260.4 182 69.8
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.1e-67 260.4 189 66.1
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.8e-67 259.6 189 66.7
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 2.4e-67 259.2 185 67.6
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 2.4e-67 259.2 186 68.3
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 2.4e-67 259.2 182 69.2
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 3.1e-67 258.8 186 69.9
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 4.1e-67 258.5 188 64.9
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 4.1e-67 258.5 179 69.8
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 4.1e-67 258.5 179 69.8
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 4.1e-67 258.5 189 65.1
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 1.2e-66 256.9 184 67.4
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 1.2e-66 256.9 187 65.2
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.5e-66 256.5 189 65.6
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 2.0e-66 256.1 174 71.3
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 2.6e-66 255.8 183 68.3
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.6e-66 255.8 178 69.1
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.6e-66 255.8 178 69.1
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 3.4e-66 255.4 182 65.9
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 4.5e-66 255.0 184 69.6
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 5.9e-66 254.6 178 70.2
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 5.9e-66 254.6 175 72.0
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 5.9e-66 254.6 184 66.3
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.2e-65 252.7 179 69.3
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 2.9e-65 252.3 179 68.7
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 5.0e-65 251.5 186 67.2
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 5.0e-65 251.5 176 69.3
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 6.5e-65 251.1 183 66.7
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 8.5e-65 250.8 190 66.8
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 8.5e-65 250.8 181 66.3
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 8.5e-65 250.8 185 69.2
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 8.5e-65 250.8 187 65.8
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 1.4e-64 250.0 185 65.4
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 1.4e-64 250.0 185 65.4
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 1.4e-64 250.0 178 67.4
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 2.5e-64 249.2 179 67.6
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 2.5e-64 249.2 178 68.5
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.5e-64 249.2 177 67.8
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 4.2e-64 248.4 185 65.9
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 7.2e-64 247.7 179 66.5
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 7.2e-64 247.7 179 66.5
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 7.2e-64 247.7 179 66.5
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 9.4e-64 247.3 177 67.8
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 9.4e-64 247.3 181 68.0
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 1.2e-63 246.9 175 69.1
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 3.6e-63 245.4 196 64.3
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 4.6e-63 245.0 195 63.6
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 7.9e-63 244.2 178 69.1
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 1.0e-62 243.8 184 64.7
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.0e-62 243.8 177 67.2
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 1.0e-62 243.8 178 68.0
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 1.4e-62 243.4 172 68.6
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.4e-62 243.4 178 69.1
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 3.0e-62 242.3 177 66.1
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 3.9e-62 241.9 196 62.8
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 1.5e-61 240.0 181 65.2
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 7.4e-61 237.7 172 67.4
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 7.4e-61 237.7 177 66.1
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 4.1e-59 231.9 183 61.2
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 4.5e-58 228.4 187 60.4
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 4.5e-58 228.4 171 64.9
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 4.2e-56 221.9 187 59.4
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 1.5e-53 213.4 180 58.9
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 1.7e-52 209.9 123 78.0
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 2.8e-52 209.1 172 59.9
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 3.7e-52 208.8 165 62.4
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 4.8e-52 208.4 188 60.1
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 4.5e-50 201.8 187 57.2
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 2.5e-48 196.1 181 56.9
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 7.2e-48 194.5 151 62.9
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 2.1e-47 193.0 148 65.5
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 4.7e-47 191.8 127 72.4
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 3.3e-45 185.7 148 60.8
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.4e-45 185.3 120 72.5
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 5.7e-45 184.9 119 72.3
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 7.4e-45 184.5 173 56.1
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 9.1e-43 177.6 178 53.4
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 1.6e-42 176.8 143 58.0
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 5.5e-40 168.3 148 56.8
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 9.4e-40 167.5 116 70.7
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 9.1e-35 151.0 179 48.6
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.2e-34 150.6 128 53.1
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 8.5e-33 144.4 91 74.7
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 5.5e-32 141.7 84 78.6
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 7.2e-32 141.4 118 58.5
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 1.2e-29 134.0 138 49.3
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 5.7e-29 131.7 185 45.9
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 5.7e-29 131.7 185 45.9
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 2.3e-25 119.8 189 40.2
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 1.1e-24 117.5 160 40.0
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 1.5e-21 107.1 78 65.4
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 3.1e-19 99.4 56 80.4
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 1.0e-17 94.4 110 40.9
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 1.1e-16 90.9 160 33.8
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.9e-16 90.1 151 35.1
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 6.1e-15 85.1 60 66.7
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 5.4e-11 72.0 55 61.8


User provided reference genes

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