Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 1.3e-70 269.6 134 100.0
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 2.8e-62 241.9 135 89.6
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 2.5e-58 228.8 134 87.3
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 8.8e-56 220.3 138 82.6
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 5.2e-48 194.5 99 96.0
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 1.2e-44 183.3 128 72.7
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 3.5e-44 181.8 144 67.4
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 1.7e-43 179.5 128 70.3
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 6.6e-43 177.6 144 65.3
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 6.6e-43 177.6 145 64.1
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 9.5e-42 173.7 145 62.8
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 1.4e-37 159.8 108 71.3
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 4.1e-37 158.3 137 61.3
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 1.0e-35 153.7 112 69.6
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 1.3e-35 153.3 106 72.6
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 6.6e-35 151.0 117 65.0
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.5e-34 149.8 131 60.3
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 3.3e-34 148.7 109 71.6
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 5.6e-34 147.9 118 65.3
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 5.6e-34 147.9 123 61.8
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 7.3e-34 147.5 115 67.8
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 7.3e-34 147.5 132 60.6
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 9.5e-34 147.1 207 44.0
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 9.5e-34 147.1 108 68.5
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 1.2e-33 146.7 124 62.1
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.6e-33 146.4 107 68.2
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 4.7e-33 144.8 98 73.5
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 8.0e-33 144.1 110 66.4
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 8.0e-33 144.1 108 66.7
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 1.4e-32 143.3 101 70.3
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 1.8e-32 142.9 111 65.8
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.8e-32 142.9 134 57.5
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.8e-32 142.9 134 57.5
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 1.8e-32 142.9 110 66.4
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 2.3e-32 142.5 107 67.3
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 4.0e-32 141.7 111 66.7
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 4.0e-32 141.7 125 63.2
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 4.0e-32 141.7 142 57.7
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 5.2e-32 141.4 98 70.4
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 6.8e-32 141.0 106 64.2
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 6.8e-32 141.0 98 68.4
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 6.8e-32 141.0 107 64.5
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 8.9e-32 140.6 98 71.4
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 1.2e-31 140.2 98 70.4
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 1.5e-31 139.8 107 66.4
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 1.5e-31 139.8 134 58.2
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 2.0e-31 139.4 111 63.1
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 2.0e-31 139.4 115 61.7
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 2.0e-31 139.4 131 56.5
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 2.6e-31 139.0 105 62.9
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 3.4e-31 138.7 108 66.7
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 3.4e-31 138.7 107 65.4
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 4.4e-31 138.3 109 64.2
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 5.8e-31 137.9 107 63.6
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 7.5e-31 137.5 111 63.1
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 7.5e-31 137.5 98 69.4
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 7.5e-31 137.5 98 69.4
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 7.5e-31 137.5 98 68.4
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 9.8e-31 137.1 110 65.5
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 1.3e-30 136.7 109 65.1
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 1.7e-30 136.3 117 59.8
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 3.7e-30 135.2 127 52.0
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 4.9e-30 134.8 116 59.5
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 4.9e-30 134.8 116 59.5
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 4.9e-30 134.8 111 60.4
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 6.4e-30 134.4 107 62.6
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 6.4e-30 134.4 98 67.3
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 8.3e-30 134.0 98 64.3
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 1.1e-29 133.7 98 67.3
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 1.1e-29 133.7 111 62.2
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.1e-29 133.7 95 66.3
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 1.4e-29 133.3 106 62.3
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 1.9e-29 132.9 107 62.6
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 1.9e-29 132.9 101 64.4
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 1.9e-29 132.9 120 60.0
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 2.4e-29 132.5 98 65.3
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 3.2e-29 132.1 113 60.2
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 5.4e-29 131.3 95 69.5
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 5.4e-29 131.3 118 60.2
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 7.0e-29 131.0 107 61.7
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 7.0e-29 131.0 98 66.3
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 1.6e-28 129.8 115 60.0
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 2.0e-28 129.4 135 51.1
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 2.0e-28 129.4 111 60.4
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 2.0e-28 129.4 98 65.3
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 2.7e-28 129.0 120 55.0
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 2.7e-28 129.0 120 55.0
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 2.7e-28 129.0 157 49.7
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 6.0e-28 127.9 107 59.8
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 6.0e-28 127.9 98 62.2
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 1.3e-27 126.7 110 59.1
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 1.7e-27 126.3 107 57.9
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 2.3e-27 125.9 104 59.6
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 6.6e-27 124.4 114 57.0
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 1.1e-26 123.6 114 57.0
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 1.9e-26 122.9 180 43.3
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 4.3e-26 121.7 97 59.8
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 5.6e-26 121.3 114 57.0
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 5.6e-26 121.3 95 61.1
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 9.5e-26 120.6 114 57.0
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 1.6e-25 119.8 114 57.0
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 6.2e-25 117.9 112 55.4
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 3.1e-24 115.5 135 49.6
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 1.7e-22 109.8 163 39.9
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 1.6e-20 103.2 97 55.7
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 7.8e-20 100.9 102 46.1
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 3.0e-19 99.0 73 65.8
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 1.1e-18 97.1 79 58.2
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 1.6e-17 93.2 117 47.9
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 8.1e-17 90.9 96 44.8
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 6.8e-16 87.8 113 38.1
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 1.2e-15 87.0 106 42.5
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 1.5e-15 86.7 64 65.6
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 2.0e-15 86.3 61 67.2
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 7.6e-15 84.3 54 74.1
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 1.7e-14 83.2 54 70.4
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 1.1e-13 80.5 97 39.2
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 2.7e-12 75.9 61 63.9
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 6.8e-08 61.2 104 34.6


User provided reference genes

Program Settings